Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TAF5L
  • Mouse genes Taf5l
  • Rat genes Taf5l,Taf5l-ps1
  • Zfish genes taf5l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Taf5l

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	TAF5L	IPI	UniProtKB:O43524	Human	PMID:25609649
Molecular Function	GO:0003713	transcription coactivator activity	TAF5L	IDA		Human	PMID:11564863
Cellular Component	GO:0036464	cytoplasmic ribonucleoprotein granule	TAF5L	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	TAF5L	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	TAF5L	IDA		Human	PMID:11564863
Cellular Component	GO:0005634	nucleus	Taf5l	IDA		Mouse	MGI:MGI:6323493|PMID:31005419
Cellular Component	GO:0000124	SAGA complex	TAF5L	IDA		Human	PMID:11564863
Cellular Component	GO:0033276	transcription factor TFTC complex	TAF5L	IDA		Human	PMID:10373431
Biological Process	GO:0043966	histone H3 acetylation	TAF5L	IDA		Human	PMID:10373431
Biological Process	GO:0035521	monoubiquitinated histone deubiquitination	TAF5L	IDA		Human	PMID:18206972
Biological Process	GO:0035522	monoubiquitinated histone H2A deubiquitination	TAF5L	IDA		Human	PMID:18206972
Biological Process	GO:0006355	regulation of DNA-templated transcription	Taf5l	IDA		Mouse	MGI:MGI:6323493|PMID:31005419
Biological Process	GO:1904672	regulation of somatic stem cell population maintenance	Taf5l	IDA		Mouse	MGI:MGI:6323493|PMID:31005419
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	TAF5L	IDA		Human	PMID:9603525

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern