Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes TAF13
  • Mouse genes Taf13
  • Rat genes Taf13
  • Zfish genes taf13
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Taf13

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Taf13	IDA		Mouse	PMID:18722179
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q5VWG9	Human	PMID:11438666
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q5JR59	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q5JR59-3	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q5JR59-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q12962	Human	PMID:7729427
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q15544	Human	PMID:7729427
Molecular Function	GO:0005515	protein binding	TAF13	IPI	UniProtKB:Q15544	Human	PMID:9695952
Molecular Function	GO:0005515	protein binding	Taf13	IPI	UniProtKB:Q99JX1	Mouse	MGI:MGI:4455093|PMID:20211142
Molecular Function	GO:0005515	protein binding	Taf13	IPI	PR:Q99JX1	Mouse	PMID:11591653
Molecular Function	GO:0017025	TBP-class protein binding	TAF13	IPI	UniProtKB:P20226	Human	PMID:29111974
Cellular Component	GO:0005730	nucleolus	TAF13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	TAF13	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	TAF13	EXP		Human	PMID:23332750
Cellular Component	GO:0005634	nucleus	Taf13	IDA		Mouse	PMID:18722179
Cellular Component	GO:0005669	transcription factor TFIID complex	TAF13	IPI		Human	PMID:23332750
Cellular Component	GO:0005669	transcription factor TFIID complex	TAF13	IDA		Human	PMID:29111974
Cellular Component	GO:0005669	transcription factor TFIID complex	TAF13	IDA		Human	PMID:7729427
Biological Process	GO:0042789	mRNA transcription by RNA polymerase II	TAF13	IDA		Human	PMID:17884155
Biological Process	GO:0060261	positive regulation of transcription initiation by RNA polymerase II	TAF13	IDA		Human	PMID:17884155
Biological Process	GO:0006468	protein phosphorylation	TAF13	IDA		Human	PMID:15053879
Biological Process	GO:0051123	RNA polymerase II preinitiation complex assembly	TAF13	IPI		Human	PMID:27007846

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern