Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SYNE3
  • Mouse genes Syne3
  • Rat genes Syne3
  • Zfish genes syne3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Syne3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0051015	actin filament binding	SYNE3	IMP		Human	PMID:22518138
Molecular Function	GO:0140444	cytoskeleton-nuclear membrane anchor activity	SYNE3	IDA		Human	PMID:18396275
Molecular Function	GO:0005515	protein binding	SYNE3	IPI	UniProtKB:O94901	Human	PMID:18396275
Molecular Function	GO:0005515	protein binding	SYNE3	IPI	UniProtKB:Q9UH99	Human	PMID:18396275
Molecular Function	GO:0005515	protein binding	SYNE3	IPI	UniProtKB:O14656	Human	PMID:18827015
Molecular Function	GO:0005515	protein binding	SYNE3	IPI	UniProtKB:Q6ZWR6	Human	PMID:22518138
Molecular Function	GO:0005515	protein binding	Syne3	IPI	UniProtKB:Q91ZU6-6	Mouse	MGI:MGI:3807136|PMID:18638474
Molecular Function	GO:0005515	protein binding	Syne3	IPI	UniProtKB:Q9ER39	Mouse	MGI:MGI:3814961|PMID:18827015
Molecular Function	GO:0005515	protein binding	Syne3	IPI	UniProtKB:Q91ZU6	Mouse	MGI:MGI:3807136|PMID:18638474
Molecular Function	GO:0005515	protein binding	Syne3	IPI	PR:Q5SS91-1	Mouse	PMID:20711465
Cellular Component	GO:0045111	intermediate filament cytoskeleton	syne3	IMP	ZFIN:ZDB-GENO-130502-1	Zfish	PMID:21303928
Cellular Component	GO:0034993	meiotic nuclear membrane microtubule tethering complex	SYNE3	IDA		Human	PMID:18396275
Cellular Component	GO:0034993	meiotic nuclear membrane microtubule tethering complex	Syne3	IDA		Mouse	PMID:20711465
Cellular Component	GO:0016020	membrane	SYNE3	HDA		Human	PMID:19946888
Cellular Component	GO:0005635	nuclear envelope	SYNE3	IDA		Human	PMID:21937718
Cellular Component	GO:0005635	nuclear envelope	SYNE3	IDA		Human	PMID:22518138
Cellular Component	GO:0031965	nuclear membrane	SYNE3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005640	nuclear outer membrane	Syne3	IDA		Mouse	MGI:MGI:4430813|PMID:18396275
Biological Process	GO:0007010	cytoskeleton organization	SYNE3	IMP		Human	PMID:21937718
Biological Process	GO:0090150	establishment of protein localization to membrane	SYNE3	IDA		Human	PMID:22518138
Biological Process	GO:0008360	regulation of cell shape	SYNE3	IMP		Human	PMID:21937718

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern