Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SURF6
  • Mouse genes Surf6
  • Rat genes Surf6
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Surf6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Surf6	IDA		Mouse	MGI:MGI:3691519|PMID:9548374
Molecular Function	GO:0005515	protein binding	SURF6	IPI	UniProtKB:P68400	Human	PMID:22113938
Molecular Function	GO:0005515	protein binding	SURF6	IPI	UniProtKB:P68400	Human	PMID:27705803
Molecular Function	GO:0005515	protein binding	SURF6	IPI	UniProtKB:P35268	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SURF6	IPI	UniProtKB:Q8IZU0	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	SURF6	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SURF6	HDA		Human	PMID:22681889
Molecular Function	GO:0003723	RNA binding	Surf6	IDA		Mouse	MGI:MGI:3691519|PMID:9548374
Cellular Component	GO:0005694	chromosome	SURF6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0001652	granular component	Surf6	IDA		Mouse	MGI:MGI:80066|PMID:8639267
Cellular Component	GO:0005730	nucleolus	SURF6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005730	nucleolus	Surf6	IDA		Mouse	PMID:16855206
Cellular Component	GO:0005654	nucleoplasm	SURF6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	Surf6	IDA		Mouse	PMID:16855206
Biological Process	GO:0042254	ribosome biogenesis	Surf6	IMP		Mouse	PMID:16855206

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern