Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes STBD1
  • Mouse genes Stbd1
  • Rat genes Stbd1
  • Zfish genes stbd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Stbd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0038024	cargo receptor activity	Stbd1	IDA		Mouse	PMID:20810658
Molecular Function	GO:0038024	cargo receptor activity	Stbd1	IMP	MGI:MGI:6356543	Mouse	PMID:27358407
Molecular Function	GO:0019899	enzyme binding	STBD1	IPI	UniProtKB:P35573	Human	PMID:24837458
Molecular Function	GO:0019899	enzyme binding	STBD1	IPI	UniProtKB:Q04446	Human	PMID:24837458
Molecular Function	GO:2001069	glycogen binding	STBD1	IDA		Human	PMID:20810658
Molecular Function	GO:0030247	polysaccharide binding	STBD1	IDA		Human	PMID:24837458
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:O95166	Human	PMID:20562859
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:P60520	Human	PMID:20562859
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q9GZQ8	Human	PMID:20562859
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q9H0R8	Human	PMID:20562859
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:O95166	Human	PMID:20810658
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q9H0R8	Human	PMID:20810658
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q9H0R8	Human	PMID:21893048
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:B3EWF7	Human	PMID:24837458
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q8N6L0	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:O95166	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	STBD1	IPI	UniProtKB:Q9H0R8	Human	PMID:28514442
Cellular Component	GO:0005783	endoplasmic reticulum	STBD1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005783	endoplasmic reticulum	STBD1	IDA		Human	PMID:24837458
Cellular Component	GO:0005783	endoplasmic reticulum	STBD1	IDA		Human	PMID:9794794
Cellular Component	GO:0016020	membrane	STBD1	IDA		Human	PMID:20810658
Cellular Component	GO:0048471	perinuclear region of cytoplasm	STBD1	IDA		Human	PMID:20810658
Cellular Component	GO:0048471	perinuclear region of cytoplasm	STBD1	IDA		Human	PMID:21893048
Cellular Component	GO:0005886	plasma membrane	STBD1	IDA		Human	PMID:9794794
Cellular Component	GO:0030315	T-tubule	STBD1	IDA		Human	PMID:9794794
Biological Process	GO:0006897	endocytosis	Stbd1	IMP	MGI:MGI:6356543	Mouse	MGI:MGI:5803726|PMID:27358407
Biological Process	GO:0005980	glycogen catabolic process	STBD1	IMP		Human	PMID:20810658
Biological Process	GO:0061723	glycophagy	STBD1	IMP		Human	PMID:20810658
Biological Process	GO:0061723	glycophagy	Stbd1	IMP		Mouse	PMID:20810658
Biological Process	GO:0046907	intracellular transport	STBD1	IGI	UniProtKB:P70699,UniProtKB:Q8C7E7	Human	PMID:27358407
Biological Process	GO:0046907	intracellular transport	Stbd1	IGI	UniProtKB:P70699	Mouse	MGI:MGI:5803726|PMID:27358407
Biological Process	GO:0061753	substrate localization to autophagosome	Stbd1	IMP		Mouse	PMID:20810658
Biological Process	GO:0061753	substrate localization to autophagosome	Stbd1	IMP	MGI:MGI:6356543	Mouse	PMID:27358407

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern