Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SRRT
  • Mouse genes Srrt
  • Rat genes Srrt
  • Zfish genes srrt
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Srrt

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Srrt	IDA		Mouse	MGI:MGI:5306514|PMID:22198669
Molecular Function	GO:0140262	mRNA cap binding complex binding	SRRT	IDA		Human	PMID:28297668
Molecular Function	GO:0005515	protein binding	SRRT	IPI	UniProtKB:P42858	Human	PMID:17500595
Molecular Function	GO:0005515	protein binding	SRRT	IPI	UniProtKB:Q15303	Human	PMID:20858735
Molecular Function	GO:0005515	protein binding	SRRT	IPI	UniProtKB:P52298,UniProtKB:Q09161	Human	PMID:23793891
Molecular Function	GO:0005515	protein binding	SRRT	IPI	UniProtKB:P52298	Human	PMID:26382858
Molecular Function	GO:0005515	protein binding	SRRT	IPI	UniProtKB:Q53F19	Human	PMID:26382858
Molecular Function	GO:0005515	protein binding	Srrt	IPI	UniProtKB:Q3UYV9|UniProtKB:Q5HZJ0	Mouse	MGI:MGI:4359572|PMID:19632182
Molecular Function	GO:0030674	protein-macromolecule adaptor activity	SRRT	IDA		Human	PMID:28297668
Molecular Function	GO:0003723	RNA binding	SRRT	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SRRT	HDA		Human	PMID:22681889
Cellular Component	GO:0005737	cytoplasm	Srrt	IDA		Mouse	MGI:MGI:4359572|PMID:19632182
Cellular Component	GO:0005654	nucleoplasm	SRRT	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	Srrt	IDA		Mouse	MGI:MGI:4359572|PMID:19632182
Cellular Component	GO:0032991	protein-containing complex	SRRT	IDA		Human	PMID:23793891
Cellular Component	GO:1990904	ribonucleoprotein complex	SRRT	IDA		Human	PMID:28297668
Biological Process	GO:0097150	neuronal stem cell population maintenance	Srrt	IMP		Mouse	MGI:MGI:5306514|PMID:22198669
Biological Process	GO:0050769	positive regulation of neurogenesis	Srrt	IMP		Mouse	MGI:MGI:5306514|PMID:22198669
Biological Process	GO:0031053	primary miRNA processing	SRRT	IMP		Human	PMID:19632182
Biological Process	GO:0031053	primary miRNA processing	Srrt	IMP		Mouse	MGI:MGI:4359572|PMID:19632182
Biological Process	GO:0006355	regulation of DNA-templated transcription	Srrt	IDA		Mouse	MGI:MGI:5306514|PMID:22198669

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern