Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SRRM2
  • Mouse genes Srrm2
  • Rat genes Srrm2
  • Zfish genes srrm2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Srrm2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0070742	C2H2 zinc finger domain binding	SRRM2	IDA		Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	SRRM2	IPI	UniProtKB:Q9BQA5	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	SRRM2	IPI	UniProtKB:O60285	Human	PMID:25852190
Molecular Function	GO:0005515	protein binding	SRRM2	IPI	UniProtKB:O60285	Human	PMID:32707033
Molecular Function	GO:0003723	RNA binding	SRRM2	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SRRM2	HDA		Human	PMID:22681889
Cellular Component	GO:0015030	Cajal body	SRRM2	IDA		Human	PMID:17577209
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SRRM2	IDA		Human	PMID:11991638
Cellular Component	GO:0016607	nuclear speck	SRRM2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SRRM2	IDA		Human	PMID:17577209
Cellular Component	GO:0005634	nucleus	SRRM2	IDA		Human	PMID:28062851
Cellular Component	GO:0005634	nucleus	SRRM2	IDA		Human	PMID:28076346
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SRRM2	IDA		Human	PMID:28076346
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SRRM2	IDA		Human	PMID:29361316
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SRRM2	IDA		Human	PMID:28076346

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern