Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNRNP40
  • Mouse genes Snrnp40
  • Rat genes Snrnp40
  • Zfish genes snrnp40
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snrnp40

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:O75643	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q15029	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q6P2Q9	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q9BUQ8	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:D3DTS7	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:O60260-5	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:P14136	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:P28799	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:P54253	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:O75643	Human	PMID:9774689
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q15029	Human	PMID:9774689
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q6P2Q9	Human	PMID:9774689
Molecular Function	GO:0005515	protein binding	SNRNP40	IPI	UniProtKB:Q9BUQ8	Human	PMID:9774689
Molecular Function	GO:0003723	RNA binding	SNRNP40	HDA		Human	PMID:22658674
Cellular Component	GO:0071013	catalytic step 2 spliceosome	SNRNP40	IDA		Human	PMID:11991638
Cellular Component	GO:0005829	cytosol	SNRNP40	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SNRNP40	IDA		Human	GO_REF:0000052
Cellular Component	GO:0071007	U2-type catalytic step 2 spliceosome	SNRNP40	IDA		Human	PMID:28076346
Cellular Component	GO:0046540	U4/U6 x U5 tri-snRNP complex	SNRNP40	IPI		Human	PMID:30975767

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern