Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNPH
  • Mouse genes Snph
  • Rat genes Snph
  • Zfish genes snphb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snph

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNPH	IPI	UniProtKB:P23025	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNPH	IPI	UniProtKB:Q6NTF9-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNPH	IPI	UniProtKB:Q9UI12	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Snph	IPI	RGD:71096	Rat	PMID:12896979|RGD:2315039
Molecular Function	GO:0005515	protein binding	Snph	IPI	RGD:69430	Rat	PMID:14985338|RGD:2315034
Cellular Component	GO:0044295	axonal growth cone	snphb	IDA		Zfish	PMID:31481398
Cellular Component	GO:0005737	cytoplasm	SNPH	IDA		Human	PMID:15459722
Cellular Component	GO:0005881	cytoplasmic microtubule	SNPH	IDA		Human	PMID:23264731
Cellular Component	GO:0031966	mitochondrial membrane	Snph	IDA		Rat	PMID:12941459|RGD:2315037
Cellular Component	GO:0005739	mitochondrion	Snph	HDA		Mouse	PMID:18614015
Cellular Component	GO:0043005	neuron projection	Snph	IDA		Rat	PMID:10707983|RGD:2315041
Cellular Component	GO:0043005	neuron projection	Snph	IDA		Rat	PMID:14985338|RGD:2315034
Cellular Component	GO:0043025	neuronal cell body	Snph	IDA		Rat	PMID:10707983|RGD:2315041
Cellular Component	GO:0005886	plasma membrane	Snph	IDA		Rat	PMID:12941459|RGD:2315037
Cellular Component	GO:0042734	presynaptic membrane	Snph	IDA		Rat	PMID:12941459|RGD:2315037
Biological Process	GO:0007420	brain development	Snph	IEP		Rat	PMID:12941459|RGD:2315037
Biological Process	GO:0051659	maintenance of mitochondrion location	snphb	IGI	ZFIN:ZDB-GENE-081104-227	Zfish	PMID:31481398
Biological Process	GO:0051659	maintenance of mitochondrion location	snphb	IMP	ZFIN:ZDB-GENO-200723-1	Zfish	PMID:31481398
Biological Process	GO:0030182	neuron differentiation	Snph	IEP		Rat	PMID:12941459|RGD:2315037

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern