Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SNIP1
  • Mouse genes Snip1
  • Rat genes Snip1
  • Zfish genes snip1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Snip1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P01106	Human	PMID:17157259
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q13573	Human	PMID:18794151
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P49760	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P55081	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P78362	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q13123	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q13573	Human	PMID:22365833
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P49760	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q15025	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q13573	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q15025	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:A7MD48	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P13807	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P14859-6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P49760	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P49761	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P55081	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P60371	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P62508-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P78362	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q13188	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q5MJ10	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q5T6S3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q92997	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q96C00	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:Q9H2G4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SNIP1	IPI	UniProtKB:P49760	Human	PMID:32707033
Molecular Function	GO:0005515	protein binding	Snip1	IPI	PR:Q04207	Mouse	PMID:11567019
Molecular Function	GO:0003723	RNA binding	SNIP1	HDA		Human	PMID:22658674
Cellular Component	GO:0005829	cytosol	SNIP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SNIP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SNIP1	IDA		Human	PMID:29360106
Cellular Component	GO:0005634	nucleus	Snip1	IDA		Mouse	PMID:11567019
Cellular Component	GO:0071005	U2-type precatalytic spliceosome	SNIP1	IDA		Human	PMID:29360106
Biological Process	GO:0007249	I-kappaB kinase/NF-kappaB signaling	Snip1	IDA		Mouse	PMID:11567019
Biological Process	GO:0035196	miRNA processing	SNIP1	IMP		Human	PMID:18632581
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SNIP1	IDA		Human	PMID:29360106
Biological Process	GO:0000398	mRNA splicing, via spliceosome	snip1	IMP	ZFIN:ZDB-GENO-190718-4	Zfish	PMID:29969449
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Snip1	IDA		Mouse	PMID:11567019

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern