Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMOC1
  • Mouse genes Smoc1
  • Rat genes Smoc1
  • Zfish genes smoc1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smoc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0050840	extracellular matrix binding	Smoc1	IDA		Mouse	PMID:18757743
Molecular Function	GO:0005515	protein binding	SMOC1	IPI	UniProtKB:P09022	Human	PMID:23088713
Molecular Function	GO:0005515	protein binding	SMOC1	IPI	UniProtKB:P15884	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMOC1	IPI	UniProtKB:P60410	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMOC1	IPI	UniProtKB:Q7Z3S9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SMOC1	IPI	UniProtKB:Q7Z3S9	Human	PMID:31515488
Cellular Component	GO:0005604	basement membrane	Smoc1	IDA		Mouse	PMID:18757743
Biological Process	GO:0030198	extracellular matrix organization	Smoc1	IDA		Mouse	PMID:18757743
Biological Process	GO:0001654	eye development	SMOC1	IMP		Human	PMID:21194678
Biological Process	GO:0001654	eye development	Smoc1	IMP		Mouse	MGI:MGI:4939981|PMID:21194678
Biological Process	GO:0001654	eye development	smoc1	IMP	ZFIN:ZDB-MRPHLNO-110310-5	Zfish	PMID:21194680
Biological Process	GO:0060173	limb development	SMOC1	IMP		Human	PMID:21194678
Biological Process	GO:0060173	limb development	Smoc1	IMP		Mouse	MGI:MGI:4939981|PMID:21194678
Biological Process	GO:0002072	optic cup morphogenesis involved in camera-type eye development	smoc1	IMP	ZFIN:ZDB-MRPHLNO-110310-5	Zfish	PMID:21194680
Biological Process	GO:0035138	pectoral fin morphogenesis	smoc1	IMP	ZFIN:ZDB-FISH-210615-16	Zfish	PMID:32209485
Biological Process	GO:0030513	positive regulation of BMP signaling pathway	smoc1	IMP	ZFIN:ZDB-FISH-210615-18	Zfish	PMID:32209485
Biological Process	GO:0010811	positive regulation of cell-substrate adhesion	Smoc1	IDA		Mouse	PMID:18757743
Biological Process	GO:0045667	regulation of osteoblast differentiation	SMOC1	IMP		Human	PMID:20359165

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern