Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMC1B
  • Mouse genes Smc1b
  • Rat genes Smc1b
  • Zfish genes smc1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smc1b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003677	DNA binding	Smc1b	IDA		Mouse	PMID:11564881
Molecular Function	GO:0005515	protein binding	Smc1b	IPI	PR:Q9CW03	Mouse	PMID:11564881
Molecular Function	GO:0005515	protein binding	Smc1b	IPI	PR:Q9CW03	Mouse	PMID:12759374
Molecular Function	GO:0005515	protein binding	Smc1b	IPI	PR:Q8C5S7	Mouse	PMID:12759374
Molecular Function	GO:0005515	protein binding	Smc1b	IPI	PR:P70281	Mouse	PMID:12759374
Cellular Component	GO:0000775	chromosome, centromeric region	Smc1b	IDA		Mouse	PMID:11564881
Cellular Component	GO:0000794	condensed nuclear chromosome	Smc1b	IDA		Mouse	PMID:22164254
Cellular Component	GO:0005829	cytosol	SMC1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000800	lateral element	Smc1b	IDA		Mouse	PMID:15870106
Cellular Component	GO:0000800	lateral element	Smc1b	IDA		Mouse	PMID:22711701
Cellular Component	GO:0030893	meiotic cohesin complex	SMC1B	IDA		Human	PMID:21242291
Cellular Component	GO:0030893	meiotic cohesin complex	Smc1b	IDA		Mouse	MGI:MGI:5050018|PMID:21527826
Cellular Component	GO:0030893	meiotic cohesin complex	Smc1b	IDA		Mouse	PMID:21743440
Cellular Component	GO:0030893	meiotic cohesin complex	Smc1b	IDA		Mouse	PMID:22164254
Cellular Component	GO:0005654	nucleoplasm	SMC1B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0000795	synaptonemal complex	Smc1b	IDA		Mouse	PMID:11564881
Cellular Component	GO:0000795	synaptonemal complex	Smc1b	IDA		Mouse	PMID:16968740
Biological Process	GO:0051321	meiotic cell cycle	Smc1b	IPI	PR:P70281	Mouse	PMID:12759374
Biological Process	GO:0007062	sister chromatid cohesion	Smc1b	IDA		Mouse	PMID:11564881

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern