Comparative GO Graph (mouse, human, rat, zebrafish)

Source

Alliance of Genome Resources

Compare experimental GO annotations for Human-Mouse-Rat-Zebrafish orthologs to Mouse Smarcd3

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

This class contains
- Human genes SMARCD3
- Mouse genes Smarcd3
- Rat genes Smarcd3
- Zfish genes smarcd3a,smarcd3b
Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcd3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Smarcd3	IDA		Rat	PMID:23110084\|RGD:9586362
Molecular Function	GO:0140297	DNA-binding transcription factor binding	SMARCD3	IPI	UniProtKB:P36956	Human	PMID:14701856
Molecular Function	GO:0140297	DNA-binding transcription factor binding	SMARCD3	IPI	UniProtKB:P40424	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:O00482	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:P03372	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:P19793	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:P35398	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:Q13285	Human	PMID:14701856
Molecular Function	GO:0016922	nuclear receptor binding	SMARCD3	IPI	UniProtKB:Q96RI1	Human	PMID:14701856
Molecular Function	GO:0005515	protein binding	Smarcd3	IPI	UniProtKB:P31266\|UniProtKB:Q01705	Mouse	MGI:MGI:6092848\|PMID:17210915
Molecular Function	GO:0005515	protein binding	Smarcd3	IPI	UniProtKB:P10085\|UniProtKB:Q3TKT4	Mouse	MGI:MGI:5305536\|PMID:22068056
Molecular Function	GO:0005515	protein binding	Smarcd3	IPI	PR:Q08369	Mouse	PMID:15525990
Molecular Function	GO:0005102	signaling receptor binding	SMARCD3	IPI	UniProtKB:P37231	Human	PMID:14701856
Molecular Function	GO:0001221	transcription coregulator binding	SMARCD3	IPI	UniProtKB:P51532	Human	PMID:14701856
Cellular Component	GO:0000785	chromatin	SMARCD3	IDA		Human	PMID:17363140
Cellular Component	GO:0071565	nBAF complex	Smarcd3	IDA		Mouse	MGI:MGI:3775125\|PMID:17640523
Cellular Component	GO:0071565	nBAF complex	Smarcd3	IDA		Mouse	PMID:23785148
Cellular Component	GO:0071564	npBAF complex	SMARCD3	IDA		Human	PMID:18816825
Cellular Component	GO:0071564	npBAF complex	Smarcd3	IDA		Mouse	MGI:MGI:3775125\|PMID:17640523
Cellular Component	GO:0071564	npBAF complex	Smarcd3	IDA		Mouse	PMID:23785148
Cellular Component	GO:0005654	nucleoplasm	SMARCD3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SMARCD3	IDA		Human	PMID:14701856
Cellular Component	GO:0005634	nucleus	SMARCD3	IDA		Human	PMID:18816825
Cellular Component	GO:0005634	nucleus	Smarcd3	IDA		Mouse	MGI:MGI:3809321\|PMID:18816825
Cellular Component	GO:0005634	nucleus	Smarcd3	IDA		Rat	PMID:23110084\|RGD:9586362
Cellular Component	GO:0016514	SWI/SNF complex	SMARCD3	IDA		Human	PMID:29374058
Cellular Component	GO:0016514	SWI/SNF complex	SMARCD3	IDA		Human	PMID:8804307
Cellular Component	GO:0016514	SWI/SNF complex	SMARCD3	IDA		Human	PMID:8895581
Cellular Component	GO:0016514	SWI/SNF complex	Smarcd3	IDA		Mouse	MGI:MGI:6157116\|PMID:29374058
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcd3	IDA		Mouse	PMID:24335282
Biological Process	GO:0055007	cardiac muscle cell differentiation	smarcd3b	IGI	ZFIN:ZDB-MRPHLNO-060328-2,ZFIN:ZDB-MRPHLNO-060522-2,ZFIN:ZDB-MRPHLNO-070409-1	Zfish	PMID:21715426
Biological Process	GO:0003219	cardiac right ventricle formation	Smarcd3	IMP	MGI:MGI:2148567	Mouse	PMID:17519332
Biological Process	GO:0006338	chromatin remodeling	SMARCD3	IDA		Human	PMID:11726552
Biological Process	GO:0007368	determination of left/right symmetry	smarcd3b	IMP	ZFIN:ZDB-MRPHLNO-070409-1	Zfish	PMID:17210915
Biological Process	GO:0007368	determination of left/right symmetry	smarcd3b	IMP	ZFIN:ZDB-MRPHLNO-070409-2	Zfish	PMID:17210915
Biological Process	GO:0003007	heart morphogenesis	Smarcd3	IMP		Mouse	PMID:15525990
Biological Process	GO:0003007	heart morphogenesis	smarcd3b	IGI	ZFIN:ZDB-MRPHLNO-060328-2,ZFIN:ZDB-MRPHLNO-060522-2,ZFIN:ZDB-MRPHLNO-070409-1	Zfish	PMID:21715426
Biological Process	GO:0042692	muscle cell differentiation	Smarcd3	IMP		Mouse	PMID:15525990
Biological Process	GO:0003407	neural retina development	SMARCD3	IEP		Human	PMID:18816825
Biological Process	GO:0003407	neural retina development	Smarcd3	IEP		Mouse	MGI:MGI:3809321\|PMID:18816825
Biological Process	GO:0006337	nucleosome disassembly	SMARCD3	IDA		Human	PMID:8895581
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	SMARCD3	IDA		Human	PMID:14701856
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	Smarcd3	IDA		Mouse	PMID:15525990
Biological Process	GO:0010971	positive regulation of G2/M transition of mitotic cell cycle	Smarcd3	IMP		Rat	PMID:23110084\|RGD:9586362
Biological Process	GO:0002052	positive regulation of neuroblast proliferation	SMARCD3	IDA		Human	PMID:18816825
Biological Process	GO:0051152	positive regulation of smooth muscle cell differentiation	Smarcd3	IDA		Rat	PMID:23110084\|RGD:9586362
Biological Process	GO:0043393	regulation of protein binding	Smarcd3	IDA		Mouse	PMID:15525990
Biological Process	GO:0003139	secondary heart field specification	Smarcd3	IMP	MGI:MGI:2148567	Mouse	PMID:17519332

Gene Ontology Evidence Code Abbreviations:

EXP Inferred from experiment

IDA Inferred from direct assay

IEP Inferred from expression pattern

IGI Inferred from genetic interaction

IMP Inferred from mutant phenotype

IPI Inferred from physical interaction

HTP Inferred from High Throughput Experiment

HDA Inferred from High Throughput Direct Assay

HMP Inferred from High Throughput Mutant Phenotype

HGI Inferred from High Throughput Genetic Interaction

HEP Inferred from High Throughput Expression Pattern

Contributing Projects: Mouse Genome Database (MGD), Gene Expression Database (GXD), Mouse Models of Human Cancer database (MMHCdb) (formerly Mouse Tumor Biology (MTB)), Gene Ontology (GO)
Citing These Resources Funding Information Warranty Disclaimer, Privacy Notice, Licensing, & Copyright Send questions and comments to User Support.	last database update 04/16/2024 MGI 6.23

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023. Complete table of the annotations represented in this image is provided below.

Molecular Function

Cellular Component

Biological Process

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.