Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SMARCC2
  • Mouse genes Smarcc2
  • Rat genes Smarcc2
  • Zfish genes smarcc2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Smarcc2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003682	chromatin binding	Smarcc2	IDA		Mouse	PMID:23643363
Molecular Function	GO:0031492	nucleosomal DNA binding	SMARCC2	HDA		Human	PMID:16217013
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q9UKL0	Human	PMID:12192000
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q96GM5	Human	PMID:12917342
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q9P2D1	Human	PMID:20130577
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q9NYB0	Human	PMID:21044950
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:P51531	Human	PMID:21653829
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q92785	Human	PMID:28533407
Molecular Function	GO:0005515	protein binding	SMARCC2	IPI	UniProtKB:Q96GM5	Human	PMID:34591612
Molecular Function	GO:0005515	protein binding	Smarcc2	IPI	UniProtKB:Q5NCY0	Mouse	MGI:MGI:4866963|PMID:21095589
Molecular Function	GO:0005515	protein binding	Smarcc2	IPI	PR:P97767	Mouse	PMID:22513373
Molecular Function	GO:0005515	protein binding	Smarcc2	IPI	PR:Q62231	Mouse	PMID:22513373
Molecular Function	GO:0005515	protein binding	Smarcc2	IPI	RGD:1308761	Rat	PMID:8895581|RGD:8553245
Cellular Component	GO:0000785	chromatin	SMARCC2	HDA		Human	PMID:16217013
Cellular Component	GO:0071565	nBAF complex	Smarcc2	IDA		Mouse	MGI:MGI:3775125|PMID:17640523
Cellular Component	GO:0071565	nBAF complex	Smarcc2	IDA		Mouse	PMID:23785148
Cellular Component	GO:0071564	npBAF complex	Smarcc2	IDA		Mouse	MGI:MGI:3775125|PMID:17640523
Cellular Component	GO:0071564	npBAF complex	Smarcc2	IDA		Mouse	PMID:23785148
Cellular Component	GO:0005654	nucleoplasm	SMARCC2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	SMARCC2	HDA		Human	PMID:16217013
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC2	IDA		Human	PMID:10078207
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC2	IDA		Human	PMID:11078522
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC2	IDA		Human	PMID:8804307
Cellular Component	GO:0016514	SWI/SNF complex	SMARCC2	IDA		Human	PMID:8895581
Cellular Component	GO:0016514	SWI/SNF complex	Smarcc2	IDA		Mouse	PMID:23643363
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcc2	IDA		Mouse	PMID:12368262
Cellular Component	GO:0070603	SWI/SNF superfamily-type complex	Smarcc2	IDA		Mouse	PMID:24335282
Biological Process	GO:0006338	chromatin remodeling	SMARCC2	IDA		Human	PMID:10078207
Biological Process	GO:0006338	chromatin remodeling	SMARCC2	IDA		Human	PMID:11018012
Biological Process	GO:0006338	chromatin remodeling	SMARCC2	IDA		Human	PMID:11726552
Biological Process	GO:0006338	chromatin remodeling	SMARCC2	HDA		Human	PMID:16217013
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	SMARCC2	IDA		Human	PMID:12192000
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	Smarcc2	IMP		Rat	PMID:12192000|RGD:9586356
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Smarcc2	IGI	MGI:MGI:97490	Mouse	PMID:23643363
Biological Process	GO:0006337	nucleosome disassembly	SMARCC2	IDA		Human	PMID:8895581
Biological Process	GO:0045893	positive regulation of DNA-templated transcription	SMARCC2	IDA		Human	PMID:11018012
Biological Process	GO:0006357	regulation of transcription by RNA polymerase II	Smarcc2	IMP	MGI:MGI:5504429	Mouse	PMID:23643363
Biological Process	GO:0006366	transcription by RNA polymerase II	Smarcc2	IGI	MGI:MGI:97490	Mouse	PMID:23643363

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern