Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SLC39A1
  • Mouse genes Slc39a1
  • Rat genes Slc39a1
  • Zfish genes slc39a1,slc39a3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Slc39a1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:A5PKU2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:P21964	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:P49447	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:Q07325	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:Q96EC8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:Q9H2L4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	SLC39A1	IPI	UniProtKB:Q96CV9	Human	PMID:32814053
Molecular Function	GO:0005102	signaling receptor binding	Slc39a1	IPI	RGD:2520	Rat	PMID:18346199|RGD:2311564
Molecular Function	GO:0008270	zinc ion binding	slc39a1	IDA		Zfish	PMID:15683366
Molecular Function	GO:0005385	zinc ion transmembrane transporter activity	SLC39A1	IDA		Human	PMID:11301334
Molecular Function	GO:0005385	zinc ion transmembrane transporter activity	Slc39a1	IDA		Mouse	PMID:14525987
Cellular Component	GO:0005886	plasma membrane	SLC39A1	IDA		Human	PMID:11301334
Cellular Component	GO:0005886	plasma membrane	slc39a1	IDA		Zfish	PMID:15683366
Biological Process	GO:0048701	embryonic cranial skeleton morphogenesis	Slc39a1	IGI	MGI:MGI:2147269	Mouse	PMID:16652366
Biological Process	GO:0048701	embryonic cranial skeleton morphogenesis	Slc39a1	IMP	MGI:MGI:3625131	Mouse	PMID:16652366
Biological Process	GO:0001701	in utero embryonic development	Slc39a1	IMP	MGI:MGI:3625131	Mouse	PMID:16652366
Biological Process	GO:0001701	in utero embryonic development	Slc39a1	IGI	MGI:MGI:2147269	Mouse	PMID:16652366
Biological Process	GO:0060173	limb development	Slc39a1	IMP	MGI:MGI:3625131	Mouse	PMID:16652366
Biological Process	GO:0060173	limb development	Slc39a1	IGI	MGI:MGI:2147269	Mouse	PMID:16652366
Biological Process	GO:0010043	response to zinc ion	slc39a3	IDA		Zfish	PMID:18477665
Biological Process	GO:0071577	zinc ion transmembrane transport	SLC39A1	IDA		Human	PMID:11301334
Biological Process	GO:0071577	zinc ion transmembrane transport	SLC39A1	IMP		Human	PMID:11301334
Biological Process	GO:0071577	zinc ion transmembrane transport	SLC39A1	IMP		Human	PMID:12888280
Biological Process	GO:0006829	zinc ion transport	Slc39a1	IDA		Mouse	PMID:14525987
Biological Process	GO:0006829	zinc ion transport	slc39a1	IDA		Zfish	PMID:15683366

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern