Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SHPRH
  • Mouse genes Shprh
  • Rat genes Shprh
  • Zfish genes shprh
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Shprh

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SHPRH	IPI	UniProtKB:Q8WWZ3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SHPRH	IPI	UniProtKB:Q96GS4	Human	PMID:25416956
Molecular Function	GO:0061630	ubiquitin protein ligase activity	SHPRH	EXP		Human	PMID:17108083
Molecular Function	GO:0061630	ubiquitin protein ligase activity	SHPRH	EXP		Human	PMID:17130289
Molecular Function	GO:0061630	ubiquitin protein ligase activity	SHPRH	EXP		Human	PMID:18719106
Molecular Function	GO:0031625	ubiquitin protein ligase binding	SHPRH	IDA		Human	PMID:25023518
Molecular Function	GO:0004842	ubiquitin-protein transferase activity	SHPRH	IDA		Human	PMID:17108083
Biological Process	GO:0006974	DNA damage response	SHPRH	IDA		Human	PMID:25023518
Biological Process	GO:0000209	protein polyubiquitination	SHPRH	IDA		Human	PMID:17108083

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern