Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SF3B6
  • Mouse genes Sf3b6
  • Rat genes Sf3b6
  • Zfish genes sf3b6
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sf3b6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	SF3B6	IDA		Human	PMID:16432215
Molecular Function	GO:0005515	protein binding	SF3B6	IPI	UniProtKB:O75533-1	Human	PMID:16432215
Molecular Function	GO:0005515	protein binding	SF3B6	IPI	UniProtKB:O75533	Human	PMID:21062891
Molecular Function	GO:0003723	RNA binding	SF3B6	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	SF3B6	HDA		Human	PMID:22681889
Cellular Component	GO:0005654	nucleoplasm	SF3B6	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SF3B6	IDA		Human	PMID:27720643
Cellular Component	GO:0005634	nucleus	SF3B6	IDA		Human	PMID:28541300
Cellular Component	GO:0005634	nucleus	Sf3b6	IDA		Mouse	PMID:23211737
Cellular Component	GO:0005689	U12-type spliceosomal complex	SF3B6	IDA		Human	PMID:15146077
Cellular Component	GO:0005684	U2-type spliceosomal complex	SF3B6	IPI		Human	PMID:27720643
Biological Process	GO:0001825	blastocyst formation	Sf3b6	IMP		Mouse	PMID:27869233
Biological Process	GO:0001825	blastocyst formation	Sf3b6	IMP		Mouse	PMID:23211737
Biological Process	GO:0000398	mRNA splicing, via spliceosome	SF3B6	IDA		Human	PMID:27720643
Biological Process	GO:0000398	mRNA splicing, via spliceosome	Sf3b6	IMP		Mouse	PMID:23211737

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern