Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SEMA6D
  • Mouse genes Sema6d
  • Rat genes Sema6d
  • Zfish genes sema6dl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sema6d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	Sema6d	IPI	PR:P70206	Mouse	PMID:14977921
Molecular Function	GO:0030215	semaphorin receptor binding	Sema6d	IPI	PR:P70206	Mouse	PMID:17145500
Cellular Component	GO:0062023	collagen-containing extracellular matrix	Sema6d	HDA		Mouse	MGI:MGI:6201853|PMID:28071719
Cellular Component	GO:0005794	Golgi apparatus	SEMA6D	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	SEMA6D	IDA		Human	GO_REF:0000052
Biological Process	GO:0014912	negative regulation of smooth muscle cell migration	Sema6d	IDA		Mouse	PMID:14977921
Biological Process	GO:0014911	positive regulation of smooth muscle cell migration	Sema6d	IDA		Mouse	PMID:14977921
Biological Process	GO:0014909	smooth muscle cell migration	Sema6d	IDA		Mouse	PMID:14977921
Biological Process	GO:0021591	ventricular system development	Sema6d	IDA		Mouse	PMID:14977921

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern