Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SDE2
  • Mouse genes Sde2
  • Rat genes Sde2
  • Zfish genes sde2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sde2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003684	damaged DNA binding	SDE2	IDA		Human	PMID:27906959
Molecular Function	GO:0005515	protein binding	SDE2	IPI	UniProtKB:Q96EW2	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	SDE2	IPI	UniProtKB:P12004	Human	PMID:27906959
Molecular Function	GO:0005515	protein binding	SDE2	IPI	UniProtKB:Q9NZJ0	Human	PMID:27906959
Molecular Function	GO:0030515	snoRNA binding	SDE2	IDA		Human	PMID:34365507
Cellular Component	GO:0005737	cytoplasm	SDE2	IDA		Human	PMID:34365507
Cellular Component	GO:0005829	cytosol	SDE2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005794	Golgi apparatus	SDE2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	SDE2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SDE2	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	SDE2	IDA		Human	PMID:27906959
Cellular Component	GO:0005634	nucleus	SDE2	IDA		Human	PMID:34365507
Cellular Component	GO:0005886	plasma membrane	SDE2	IDA		Human	GO_REF:0000052
Biological Process	GO:0034644	cellular response to UV	SDE2	IDA		Human	PMID:27906959
Biological Process	GO:0000479	endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)	SDE2	IMP		Human	PMID:34365507
Biological Process	GO:0031571	mitotic G1 DNA damage checkpoint signaling	SDE2	IDA		Human	PMID:27906959
Biological Process	GO:0045292	mRNA cis splicing, via spliceosome	SDE2	IMP		Human	PMID:34365507
Biological Process	GO:0016485	protein processing	SDE2	IDA		Human	PMID:27906959
Biological Process	GO:0016567	protein ubiquitination	SDE2	IDA		Human	PMID:27906959

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern