Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCOC
  • Mouse genes Scoc
  • Rat genes Scoc
  • Zfish genes scoca,scocb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Scoc

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	SCOC	IPI	UniProtKB:P0DPB3	Human	PMID:20195357
Molecular Function	GO:0005515	protein binding	SCOC	IPI	UniProtKB:Q9P2Y5	Human	PMID:22354037
Molecular Function	GO:0005515	protein binding	SCOC	IPI	UniProtKB:Q9Y250	Human	PMID:22354037
Molecular Function	GO:0005515	protein binding	SCOC	IPI	UniProtKB:P15884	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	SCOC	IPI	UniProtKB:Q6A162	Human	PMID:25416956
Cellular Component	GO:0005768	endosome	SCOC	IDA		Human	PMID:22354037
Cellular Component	GO:0005794	Golgi apparatus	SCOC	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	SCOC	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005802	trans-Golgi network	SCOC	IDA		Human	PMID:22354037
Biological Process	GO:0016239	positive regulation of macroautophagy	SCOC	IDA		Human	PMID:22354037
Biological Process	GO:0061635	regulation of protein complex stability	SCOC	IMP		Human	PMID:22354037

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern