Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes SCLT1
  • Mouse genes Sclt1
  • Rat genes Sclt1
  • Zfish genes sclt1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Sclt1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0030276	clathrin binding	Sclt1	IDA		Rat	PMID:15797711|RGD:1359053
Molecular Function	GO:0005515	protein binding	Sclt1	IPI	RGD:3629	Rat	PMID:15797711|RGD:1359053
Molecular Function	GO:0017080	sodium channel regulator activity	Sclt1	IMP		Rat	PMID:15797711|RGD:1359053
Cellular Component	GO:0005814	centriole	SCLT1	IDA		Human	PMID:23348840
Cellular Component	GO:0005814	centriole	Sclt1	IDA		Mouse	PMID:24469809
Cellular Component	GO:0005813	centrosome	SCLT1	IDA		Human	PMID:21399614
Cellular Component	GO:0097539	ciliary transition fiber	SCLT1	IDA		Human	PMID:23348840
Cellular Component	GO:0071439	clathrin complex	Sclt1	IDA		Rat	PMID:15797711|RGD:1359053
Biological Process	GO:0060271	cilium assembly	SCLT1	IMP		Human	PMID:23348840
Biological Process	GO:0045162	clustering of voltage-gated sodium channels	Sclt1	IMP		Rat	PMID:15797711|RGD:1359053

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern