Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RUBCNL
  • Mouse genes Rubcnl
  • Rat genes Rubcnl
  • Zfish genes rubcnl
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rubcnl

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0032266	phosphatidylinositol-3-phosphate binding	RUBCNL	IDA		Human	PMID:28306502
Molecular Function	GO:0070273	phosphatidylinositol-4-phosphate binding	RUBCNL	IDA		Human	PMID:28306502
Molecular Function	GO:0010314	phosphatidylinositol-5-phosphate binding	RUBCNL	IDA		Human	PMID:28306502
Molecular Function	GO:0005515	protein binding	RUBCNL	IPI	UniProtKB:P56962	Human	PMID:28306502
Molecular Function	GO:0005515	protein binding	RUBCNL	IPI	UniProtKB:Q9P2Y5	Human	PMID:28306502
Molecular Function	GO:0005515	protein binding	RUBCNL	IPI	UniProtKB:P42345	Human	PMID:30704899
Molecular Function	GO:0005515	protein binding	RUBCNL	IPI	UniProtKB:P56962	Human	PMID:30704899
Molecular Function	GO:0005515	protein binding	RUBCNL	IPI	UniProtKB:Q92993	Human	PMID:30704899
Cellular Component	GO:0000421	autophagosome membrane	RUBCNL	IDA		Human	PMID:28306502
Biological Process	GO:0097352	autophagosome maturation	RUBCNL	IDA		Human	PMID:28306502
Biological Process	GO:0097352	autophagosome maturation	RUBCNL	IDA		Human	PMID:30704899
Biological Process	GO:0097352	autophagosome maturation	Rubcnl	IMP		Mouse	MGI:MGI:6282647|PMID:30704899
Biological Process	GO:0061910	autophagosome-endosome fusion	RUBCNL	IDA		Human	PMID:28306502
Biological Process	GO:0061909	autophagosome-lysosome fusion	RUBCNL	IDA		Human	PMID:28306502
Biological Process	GO:0070873	regulation of glycogen metabolic process	Rubcnl	IMP		Mouse	MGI:MGI:6282647|PMID:30704899
Biological Process	GO:0019216	regulation of lipid metabolic process	Rubcnl	IMP		Mouse	MGI:MGI:6282647|PMID:30704899

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern