Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RTF1
  • Mouse genes Rtf1
  • Rat genes Rtf1
  • Zfish genes rtf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rtf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q6P1J9	Human	PMID:15923622
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q6P1J9	Human	PMID:16024656
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q8N7H5	Human	PMID:16024656
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q8N7H5	Human	PMID:19410543
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q6P1J9	Human	PMID:20178742
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q8N7H5	Human	PMID:20178742
Molecular Function	GO:0005515	protein binding	RTF1	IPI	UniProtKB:Q8N7H5	Human	PMID:24981860
Molecular Function	GO:0005515	protein binding	Rtf1	IPI	UniProtKB:P83870	Mouse	MGI:MGI:6203683|PMID:27749823
Molecular Function	GO:0003723	RNA binding	RTF1	HDA		Human	PMID:22658674
Molecular Function	GO:0003697	single-stranded DNA binding	RTF1	IDA		Human	PMID:18184592
Cellular Component	GO:0016593	Cdc73/Paf1 complex	RTF1	IDA		Human	PMID:20178742
Cellular Component	GO:0016593	Cdc73/Paf1 complex	Rtf1	IPI	UniProtKB:Q8JZM7	Mouse	MGI:MGI:6203683|PMID:27749823
Cellular Component	GO:0005730	nucleolus	Rtf1	IDA		Mouse	PMID:9701556
Cellular Component	GO:0005634	nucleus	rtf1	IDA		Zfish	PMID:21338598
Biological Process	GO:0001832	blastocyst growth	Rtf1	IMP		Mouse	PMID:24036311
Biological Process	GO:0001711	endodermal cell fate commitment	Rtf1	IMP		Mouse	MGI:MGI:3849235|PMID:19345177
Biological Process	GO:0007507	heart development	rtf1	IMP	ZFIN:ZDB-GENO-071219-1	Zfish	PMID:17721442
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Rtf1	IMP		Mouse	MGI:MGI:3849235|PMID:19345177
Biological Process	GO:0014032	neural crest cell development	rtf1	IMP	ZFIN:ZDB-GENO-071219-1	Zfish	PMID:17721442
Biological Process	GO:0014032	neural crest cell development	rtf1	IGI	ZFIN:ZDB-GENO-030210-2,ZFIN:ZDB-MRPHLNO-071219-3	Zfish	PMID:17721442
Biological Process	GO:0014032	neural crest cell development	rtf1	IGI	ZFIN:ZDB-GENO-071219-1,ZFIN:ZDB-MRPHLNO-071219-5	Zfish	PMID:17721442
Biological Process	GO:0043473	pigmentation	rtf1	IMP	ZFIN:ZDB-GENO-071219-1	Zfish	PMID:17721442
Biological Process	GO:0036342	post-anal tail morphogenesis	rtf1	IGI	ZFIN:ZDB-GENO-030210-2,ZFIN:ZDB-GENO-071219-1	Zfish	PMID:17721442
Biological Process	GO:0001756	somitogenesis	rtf1	IGI	ZFIN:ZDB-GENO-030210-2,ZFIN:ZDB-MRPHLNO-071219-3	Zfish	PMID:17721442
Biological Process	GO:0001756	somitogenesis	rtf1	IGI	ZFIN:ZDB-GENO-071219-1,ZFIN:ZDB-GENO-071219-3	Zfish	PMID:17721442
Biological Process	GO:0001756	somitogenesis	rtf1	IMP	ZFIN:ZDB-GENO-071219-1	Zfish	PMID:17721442
Biological Process	GO:0001756	somitogenesis	rtf1	IMP	ZFIN:ZDB-MRPHLNO-071219-3	Zfish	PMID:17721442
Biological Process	GO:0019827	stem cell population maintenance	RTF1	IDA		Human	PMID:19345177
Biological Process	GO:0019827	stem cell population maintenance	Rtf1	IMP		Mouse	MGI:MGI:3849235|PMID:19345177
Biological Process	GO:0006368	transcription elongation by RNA polymerase II	RTF1	IDA		Human	PMID:20178742

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern