Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RPUSD4
  • Mouse genes Rpusd4
  • Rat genes Rpusd4
  • Zfish genes rpusd4
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rpusd4

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1990400	mitochondrial ribosomal large subunit rRNA binding	RPUSD4	IDA		Human	PMID:28082677
Molecular Function	GO:0005515	protein binding	RPUSD4	IPI	UniProtKB:Q9BQA5	Human	PMID:17577209
Molecular Function	GO:0005515	protein binding	RPUSD4	IPI	UniProtKB:P01100	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RPUSD4	IPI	UniProtKB:P50440	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	RPUSD4	IPI	UniProtKB:Q00613	Human	PMID:32814053
Molecular Function	GO:0009982	pseudouridine synthase activity	RPUSD4	IMP		Human	PMID:28082677
Molecular Function	GO:0009982	pseudouridine synthase activity	RPUSD4	IDA		Human	PMID:35051350
Molecular Function	GO:0003723	RNA binding	RPUSD4	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RPUSD4	HDA		Human	PMID:22681889
Molecular Function	GO:0000049	tRNA binding	RPUSD4	IDA		Human	PMID:28082677
Cellular Component	GO:0005739	mitochondrion	RPUSD4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005739	mitochondrion	RPUSD4	IDA		Human	PMID:28082677
Cellular Component	GO:0005739	mitochondrion	Rpusd4	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005654	nucleoplasm	RPUSD4	IDA		Human	GO_REF:0000052
Cellular Component	GO:0035770	ribonucleoprotein granule	RPUSD4	IDA		Human	PMID:28082677
Biological Process	GO:0070902	mitochondrial tRNA pseudouridine synthesis	RPUSD4	IMP		Human	PMID:28082677
Biological Process	GO:1990481	mRNA pseudouridine synthesis	RPUSD4	IDA		Human	PMID:35051350
Biological Process	GO:0070131	positive regulation of mitochondrial translation	RPUSD4	IMP		Human	PMID:27667664

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern