Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RP1
  • Mouse genes Rp1
  • Rat genes Rp1
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008017	microtubule binding	Rp1	IDA		Mouse	MGI:MGI:3629826|PMID:15269252
Molecular Function	GO:0005515	protein binding	RP1	IPI	UniProtKB:Q04859	Human	PMID:21148103
Cellular Component	GO:0005930	axoneme	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858
Cellular Component	GO:0005930	axoneme	Rp1	IDA		Mouse	PMID:29899041
Cellular Component	GO:0005930	axoneme	Rp1	IDA		Mouse	PMID:24833722
Cellular Component	GO:0005930	axoneme	Rp1	IDA		Mouse	PMID:20592197
Cellular Component	GO:0005930	axoneme	Rp1	IDA		Mouse	PMID:20368623
Cellular Component	GO:0097542	ciliary tip	Rp1	IDA		Mouse	PMID:21148103
Cellular Component	GO:0005929	cilium	Rp1	IDA		Mouse	PMID:12651948
Cellular Component	GO:0005929	cilium	Rp1	IDA		Mouse	PMID:11773008
Cellular Component	GO:0005875	microtubule associated complex	Rp1	IDA		Mouse	MGI:MGI:3629826|PMID:15269252
Cellular Component	GO:0097733	photoreceptor cell cilium	Rp1	IDA		Mouse	PMID:29899041
Cellular Component	GO:0032391	photoreceptor connecting cilium	RP1	IDA		Human	PMID:11767049
Cellular Component	GO:0032391	photoreceptor connecting cilium	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858
Cellular Component	GO:0032391	photoreceptor connecting cilium	Rp1	IDA		Mouse	PMID:11773008
Cellular Component	GO:0001917	photoreceptor inner segment	RP1	IDA		Human	PMID:11773008
Cellular Component	GO:0001917	photoreceptor inner segment	Rp1	IDA		Mouse	MGI:MGI:2156902|PMID:11773008
Cellular Component	GO:0001750	photoreceptor outer segment	Rp1	IDA		Mouse	MGI:MGI:3629826|PMID:15269252
Cellular Component	GO:0001750	photoreceptor outer segment	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858
Biological Process	GO:0035082	axoneme assembly	Rp1	IDA		Mouse	MGI:MGI:3629826|PMID:15269252
Biological Process	GO:0071482	cellular response to light stimulus	Rp1	IMP		Mouse	PMID:21052544
Biological Process	GO:0042461	photoreceptor cell development	Rp1	IMP		Mouse	MGI:MGI:3604930|PMID:16126734
Biological Process	GO:0045494	photoreceptor cell maintenance	Rp1	IMP		Mouse	MGI:MGI:3604930|PMID:16126734
Biological Process	GO:0035845	photoreceptor cell outer segment organization	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858
Biological Process	GO:1902857	positive regulation of non-motile cilium assembly	Rp1	IDA		Mouse	PMID:21148103
Biological Process	GO:1902857	positive regulation of non-motile cilium assembly	Rp1	IGI	MGI:MGI:96913	Mouse	PMID:21148103
Biological Process	GO:0060041	retina development in camera-type eye	Rp1	IMP		Mouse	PMID:21052544
Biological Process	GO:0060042	retina morphogenesis in camera-type eye	Rp1	IMP		Mouse	PMID:21052544
Biological Process	GO:0046549	retinal cone cell development	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858
Biological Process	GO:0046548	retinal rod cell development	Rp1	IDA		Mouse	MGI:MGI:2676521|PMID:14507858

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern