Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RFNG
  • Mouse genes Rfng
  • Rat genes Rfng
  • Zfish genes rfng
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rfng

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Biological Process	GO:0035284	brain segmentation	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-6	Zfish	PMID:15659486
Biological Process	GO:0035284	brain segmentation	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-5	Zfish	PMID:15659486
Biological Process	GO:0021592	fourth ventricle development	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-5,ZFIN:ZDB-MRPHLNO-050308-6	Zfish	PMID:18191121
Biological Process	GO:0030902	hindbrain development	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-6	Zfish	PMID:15659486
Biological Process	GO:0030902	hindbrain development	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-5	Zfish	PMID:15659486
Biological Process	GO:0030902	hindbrain development	rfng	IMP		Zfish	PMID:15068793
Biological Process	GO:0045746	negative regulation of Notch signaling pathway	Rfng	IMP		Rat	PMID:11165380|RGD:633801
Biological Process	GO:0045747	positive regulation of Notch signaling pathway	Rfng	IDA		Mouse	PMID:15574878
Biological Process	GO:0032092	positive regulation of protein binding	Rfng	IDA		Mouse	PMID:15574878
Biological Process	GO:0008593	regulation of Notch signaling pathway	Rfng	IMP		Mouse	MGI:MGI:5908761|PMID:28089369
Biological Process	GO:0021654	rhombomere boundary formation	rfng	IMP	ZFIN:ZDB-MRPHLNO-050308-5	Zfish	PMID:22764046

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern