Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBP1
  • Mouse genes Rbp1
  • Rat genes Rbp1
  • Zfish genes rbp1.1,rbp1.2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:1904768	all-trans-retinol binding	RBP1	IDA		Human	PMID:28057518
Molecular Function	GO:0005515	protein binding	RBP1	IPI	UniProtKB:P49366	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBP1	IPI	UniProtKB:Q6DKK2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBP1	IPI	UniProtKB:Q8N2K1	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBP1	IPI	UniProtKB:Q9UBN6	Human	PMID:32296183
Molecular Function	GO:0019841	retinol binding	Rbp1	IDA		Rat	PMID:12850148|RGD:6893656
Molecular Function	GO:0019841	retinol binding	Rbp1	IDA		Rat	PMID:16755609|RGD:6484735
Molecular Function	GO:0019841	retinol binding	Rbp1	IDA		Rat	PMID:19965581|RGD:6484697
Cellular Component	GO:0044297	cell body	Rbp1	IDA		Rat	PMID:19180257|RGD:6893662
Cellular Component	GO:0005829	cytosol	RBP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005829	cytosol	Rbp1	IDA		Rat	PMID:12850148|RGD:6893656
Cellular Component	GO:0005811	lipid droplet	RBP1	IDA		Human	PMID:15632377
Cellular Component	GO:0005811	lipid droplet	Rbp1	IDA		Mouse	MGI:MGI:3525998|PMID:15632377
Cellular Component	GO:0005654	nucleoplasm	RBP1	IDA		Human	GO_REF:0000052
Biological Process	GO:0055088	lipid homeostasis	RBP1	IMP		Human	PMID:15632377
Biological Process	GO:0030852	regulation of granulocyte differentiation	Rbp1	IMP	MGI:MGI:2181412	Mouse	PMID:11222375
Biological Process	GO:0080021	response to benzoic acid	Rbp1	IEP		Rat	PMID:30476341|RGD:151893502
Biological Process	GO:0032526	response to retinoic acid	Rbp1	HEP		Rat	PMID:30329139|RGD:151893506
Biological Process	GO:0032526	response to retinoic acid	Rbp1	IEP		Rat	PMID:30476341|RGD:151893502
Biological Process	GO:0033189	response to vitamin A	Rbp1	IMP	MGI:MGI:2181412	Mouse	PMID:11222375
Biological Process	GO:0002138	retinoic acid biosynthetic process	Rbp1	IEP		Rat	PMID:15950969|RGD:6771322
Biological Process	GO:0042573	retinoic acid metabolic process	Rbp1	IGI	MGI:MGI:87921	Mouse	PMID:15193143
Biological Process	GO:0042573	retinoic acid metabolic process	Rbp1	IMP	MGI:MGI:2181412	Mouse	PMID:15193143
Biological Process	GO:0042572	retinol metabolic process	Rbp1	IGI	MGI:MGI:87921	Mouse	PMID:15193143
Biological Process	GO:0042572	retinol metabolic process	Rbp1	IMP	MGI:MGI:2181412	Mouse	PMID:15193143
Biological Process	GO:0042572	retinol metabolic process	Rbp1	IMP	MGI:MGI:2181412	Mouse	PMID:15765518
Biological Process	GO:0042572	retinol metabolic process	Rbp1	IDA		Rat	PMID:14642897|RGD:6484737
Biological Process	GO:0006776	vitamin A metabolic process	RBP1	IMP		Human	PMID:15632377

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern