Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RBM4B
  • Mouse genes Rbm4b
  • Rat genes Rbm4b
  • Zfish genes rbm4.1,rbm4.2
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rbm4b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003730	mRNA 3'-UTR binding	rbm4.2	IDA		Zfish	PMID:31227602
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q6P4Q7	Human	PMID:15840172
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q8NB12	Human	PMID:23455924
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q86Y13	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q9BUJ2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q86Y13	Human	PMID:29892012
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:P09012	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q13351	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q3SY00	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q86V38	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RBM4B	IPI	UniProtKB:Q8NI38	Human	PMID:32296183
Molecular Function	GO:0003723	RNA binding	RBM4B	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	RBM4B	HDA		Human	PMID:22681889
Cellular Component	GO:0005829	cytosol	RBM4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	RBM4B	IDA		Human	GO_REF:0000052
Cellular Component	GO:0032991	protein-containing complex	RBM4B	IDA		Human	PMID:15840172
Biological Process	GO:0032922	circadian regulation of gene expression	Rbm4b	IDA		Mouse	MGI:MGI:3703208|PMID:17264215
Biological Process	GO:0007623	circadian rhythm	Rbm4b	IDA		Mouse	MGI:MGI:3703208|PMID:17264215
Biological Process	GO:0043153	entrainment of circadian clock by photoperiod	Rbm4b	IDA		Mouse	MGI:MGI:3703208|PMID:17264215
Biological Process	GO:0010628	positive regulation of gene expression	Rbm4b	IDA		Mouse	PMID:17264215
Biological Process	GO:0006417	regulation of translation	Rbm4b	IDA		Mouse	MGI:MGI:3703208|PMID:17264215

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern