Comparative GO Graph (mouse, human, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB39B
  • Mouse genes Rab39b
  • Rat genes
  • Zfish genes rab39ba,rab39bb
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab39b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0031489	myosin V binding	RAB39B	IPI	UniProtKB:Q9Y4I1	Human	PMID:24006491
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q8IUH5	Human	PMID:24705354
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q08379	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q96T51	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q13501	Human	PMID:27103069
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q08379	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:Q96T51	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	RAB39B	IPI	UniProtKB:O14972	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rab39b	IPI	UniProtKB:Q8CGB3-3	Mouse	MGI:MGI:5644013|PMID:23624502
Molecular Function	GO:0005515	protein binding	Rab39b	IPI	UniProtKB:Q99MK9	Mouse	MGI:MGI:5603273|PMID:23294242
Molecular Function	GO:0005515	protein binding	Rab39b	IPI	UniProtKB:Q62108	Mouse	MGI:MGI:6451238|PMID:31651360
Cellular Component	GO:0005794	Golgi apparatus	RAB39B	IDA		Human	PMID:20159109
Cellular Component	GO:0005794	Golgi apparatus	RAB39B	IDA		Human	PMID:24006491
Cellular Component	GO:0005794	Golgi apparatus	Rab39b	IDA		Mouse	MGI:MGI:4457462|PMID:20159109
Cellular Component	GO:0043005	neuron projection	RAB39B	IDA		Human	PMID:24006491
Cellular Component	GO:0031982	vesicle	RAB39B	IDA		Human	PMID:24006491
Biological Process	GO:0010506	regulation of autophagy	RAB39B	IMP		Human	PMID:27103069
Biological Process	GO:0050808	synapse organization	Rab39b	IMP		Mouse	MGI:MGI:4457462|PMID:20159109
Biological Process	GO:0016192	vesicle-mediated transport	Rab39b	IMP		Mouse	MGI:MGI:4457462|PMID:20159109

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern