Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes RAB39A
  • Mouse genes Rab39
  • Rat genes Rab39a
  • Zfish genes
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Rab39

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q14457	Human	PMID:24349490
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q08379	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q9H2G9	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:P61026	Human	PMID:26824392
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:P61026	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q08379	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q9H2G9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	RAB39A	IPI	UniProtKB:Q9H8Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Rab39	IPI	UniProtKB:Q8CGB3-3	Mouse	MGI:MGI:5644013|PMID:23624502
Molecular Function	GO:0005515	protein binding	Rab39	IPI	UniProtKB:Q99MK9	Mouse	MGI:MGI:5603273|PMID:23294242
Cellular Component	GO:0045335	phagocytic vesicle	RAB39A	IDA		Human	PMID:21255211
Biological Process	GO:0090383	phagosome acidification	RAB39A	IMP		Human	PMID:21255211
Biological Process	GO:0090385	phagosome-lysosome fusion	RAB39A	IMP		Human	PMID:21255211

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern