Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PNN
  • Mouse genes Pnn
  • Rat genes Pnn
  • Zfish genes pnn
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pnn

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q13573	Human	PMID:18794151
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q13573	Human	PMID:20467437
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:P68400	Human	PMID:22113938
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:O00422	Human	PMID:22388736
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q15287-1	Human	PMID:22388736
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q9UKV3	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q13573	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q9UKV3	Human	PMID:30021884
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:Q7Z3Y8	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PNN	IPI	UniProtKB:P68400	Human	PMID:32707033
Molecular Function	GO:0003723	RNA binding	PNN	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	PNN	HDA		Human	PMID:22681889
Cellular Component	GO:0071013	catalytic step 2 spliceosome	PNN	IDA		Human	PMID:11991638
Cellular Component	GO:0005737	cytoplasm	Pnn	IDA		Mouse	PMID:16427813
Cellular Component	GO:0016020	membrane	PNN	HDA		Human	PMID:19946888
Cellular Component	GO:0016607	nuclear speck	PNN	IDA		Human	GO_REF:0000052
Cellular Component	GO:0016607	nuclear speck	Pnn	IDA		Mouse	PMID:16427813
Biological Process	GO:0014033	neural crest cell differentiation	pnn	IMP	ZFIN:ZDB-MRPHLNO-120816-2	Zfish	PMID:22527695
Biological Process	GO:0014033	neural crest cell differentiation	pnn	IMP	ZFIN:ZDB-MRPHLNO-120816-1	Zfish	PMID:22527695

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern