Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PLXNC1
  • Mouse genes Plxnc1
  • Rat genes Plxnc1
  • Zfish genes plxnc1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Plxnc1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	PLXNC1	IPI	UniProtKB:O75326	Human	PMID:20727575
Molecular Function	GO:0005515	protein binding	PLXNC1	IPI	UniProtKB:Q8JL80	Human	PMID:20727575
Cellular Component	GO:0150053	cerebellar climbing fiber to Purkinje cell synapse	Plxnc1	IDA		Mouse	PMID:24831527
Cellular Component	GO:0150053	cerebellar climbing fiber to Purkinje cell synapse	Plxnc1	IMP		Mouse	PMID:24831527
Cellular Component	GO:0016020	membrane	PLXNC1	HDA		Human	PMID:19946888
Biological Process	GO:0043087	regulation of GTPase activity	plxnc1	IDA		Zfish	PMID:24137545
Biological Process	GO:1905806	regulation of synapse pruning	Plxnc1	IMP		Mouse	PMID:24831527
Biological Process	GO:1905806	regulation of synapse pruning	Plxnc1	IDA		Mouse	PMID:24831527

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern