Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PKP1
  • Mouse genes Pkp1
  • Rat genes Pkp1
  • Zfish genes pkp1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pkp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005521	lamin binding	PKP1	IDA		Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P05783	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P05787	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P08670	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P13647	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P15924	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P19012	Human	PMID:10852826
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:P15924	Human	PMID:11790773
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:Q02413	Human	PMID:19136012
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:Q06787	Human	PMID:25225333
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:Q92900	Human	PMID:25225333
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:Q63HR2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PKP1	IPI	UniProtKB:Q9UHL9	Human	PMID:26275350
Molecular Function	GO:0005515	protein binding	Pkp1	IPI	PR:Q02248	Mouse	PMID:17535849
Molecular Function	GO:0005515	protein binding	Pkp1	IPI	PR:P55849	Mouse	PMID:14673151
Cellular Component	GO:0001533	cornified envelope	Pkp1	IDA		Mouse	PMID:26644517
Cellular Component	GO:0030057	desmosome	Pkp1	IDA		Mouse	PMID:18496566
Cellular Component	GO:1990124	messenger ribonucleoprotein complex	PKP1	IDA		Human	PMID:25225333
Cellular Component	GO:0005654	nucleoplasm	PKP1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005886	plasma membrane	PKP1	IDA		Human	GO_REF:0000052
Biological Process	GO:0045110	intermediate filament bundle assembly	PKP1	IDA		Human	PMID:10852826
Biological Process	GO:1902373	negative regulation of mRNA catabolic process	PKP1	IMP		Human	PMID:25225333
Biological Process	GO:0010628	positive regulation of gene expression	PKP1	IMP		Human	PMID:25225333

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern