Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PHAF1
  • Mouse genes Phaf1
  • Rat genes Phaf1
  • Zfish genes phaf1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Phaf1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0035254	glutamate receptor binding	Phaf1	IDA		Rat	PMID:14529721|RGD:1302287
Molecular Function	GO:0030165	PDZ domain binding	Phaf1	IPI	RGD:632281	Rat	PMID:9514910|RGD:9999368
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:P54252	Human	PMID:16713569
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q9H6U6-2	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:O15442-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:O43439-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:P48146	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q68D86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q6MZQ0	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q9H0E2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q9NRE2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:P54252	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	PHAF1	IPI	UniProtKB:Q9H6U6	Human	PMID:33499712
Molecular Function	GO:0005515	protein binding	Phaf1	IPI	RGD:632281	Rat	PMID:9514910|RGD:9999368
Cellular Component	GO:0030425	dendrite	Phaf1	IDA		Rat	PMID:14529721|RGD:1302287
Cellular Component	GO:0016020	membrane	Phaf1	IDA		Rat	PMID:14529721|RGD:1302287
Cellular Component	GO:0000407	phagophore assembly site	PHAF1	IDA		Human	PMID:33499712
Cellular Component	GO:0030672	synaptic vesicle membrane	Phaf1	IDA		Rat	PMID:14529721|RGD:1302287
Cellular Component	GO:0005802	trans-Golgi network	Phaf1	IDA		Rat	PMID:14529721|RGD:1302287
Biological Process	GO:0043001	Golgi to plasma membrane protein transport	Phaf1	IMP		Rat	PMID:14529721|RGD:1302287

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern