Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDP1
  • Mouse genes Pdp1
  • Rat genes Pdp1
  • Zfish genes pdp1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pdp1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	Pdp1	IMP		Rat	PMID:15210124|RGD:1642641
Molecular Function	GO:0000287	magnesium ion binding	Pdp1	IDA		Rat	PMID:17532339|RGD:1642638
Molecular Function	GO:0005515	protein binding	PDP1	IPI	UniProtKB:O43439	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDP1	IPI	UniProtKB:Q0VD86	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDP1	IPI	UniProtKB:Q3LI66	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDP1	IPI	UniProtKB:Q6FHY5	Human	PMID:32296183
Molecular Function	GO:0004722	protein serine/threonine phosphatase activity	PDP1	IDA		Human	PMID:20801214
Molecular Function	GO:0004722	protein serine/threonine phosphatase activity	Pdp1	IMP		Rat	PMID:15210124|RGD:1642641
Molecular Function	GO:0044877	protein-containing complex binding	Pdp1	IMP		Rat	PMID:15210124|RGD:1642641
Cellular Component	GO:0005739	mitochondrion	Pdp1	HDA		Mouse	PMID:18614015
Cellular Component	GO:0005739	mitochondrion	Pdp1	IDA		Rat	PMID:12765946|RGD:1582364
Cellular Component	GO:0005739	mitochondrion	Pdp1	IDA		Rat	PMID:9651365|RGD:729524
Biological Process	GO:0035970	peptidyl-threonine dephosphorylation	PDP1	IDA		Human	PMID:20801214

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern