Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PDE6D
  • Mouse genes Pde6d
  • Rat genes Pde6d
  • Zfish genes pde6d
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pde6d

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005095	GTPase inhibitor activity	Pde6d	IDA		Mouse	MGI:MGI:3584319|PMID:15979089
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P01112	Human	PMID:11980706
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q9D0J4	Human	PMID:11980706
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36405	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q9NXU5	Human	PMID:16169070
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:18588884
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36405	Human	PMID:18588884
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q15382:PRO_0000082708	Human	PMID:23559067
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834	Human	PMID:23559067
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q9D0J4	Human	PMID:23559067
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q9WUL7	Human	PMID:23559067
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q0P5N6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q7DB77	Human	PMID:25519916
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36405	Human	PMID:26455799
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:27107012
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834-2	Human	PMID:27173435
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834-2	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36405	Human	PMID:30257685
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834	Human	PMID:30257685
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q0P5N6	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36404	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P36405	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q0P5N6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q5XKR4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q9NXU5	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:P51153	Human	PMID:9712853
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834	Human	PMID:9990021
Molecular Function	GO:0005515	protein binding	PDE6D	IPI	UniProtKB:Q92834-2	Human	PMID:9990021
Molecular Function	GO:0005515	protein binding	Pde6d	IPI	UniProtKB:Q9WUL7	Mouse	MGI:MGI:1928255|PMID:10518933
Molecular Function	GO:0005515	protein binding	Pde6d	IPI	UniProtKB:Q9D0J4|UniProtKB:Q9WUL7	Mouse	MGI:MGI:3584319|PMID:15979089
Molecular Function	GO:0005515	protein binding	Pde6d	IPI	UniProtKB:Q9R0X5	Mouse	MGI:MGI:4887348|PMID:9990021
Molecular Function	GO:0005515	protein binding	Pde6d	IPI	UniProtKB:Q92834-2|UniProtKB:Q92834	Mouse	MGI:MGI:4887348|PMID:9990021
Molecular Function	GO:0031267	small GTPase binding	PDE6D	IPI	UniProtKB:P51153	Human	PMID:9712853
Cellular Component	GO:0031410	cytoplasmic vesicle	PDE6D	IDA		Human	PMID:9712853
Cellular Component	GO:0005829	cytosol	PDE6D	IDA		Human	PMID:9712853
Biological Process	GO:0001654	eye development	pde6d	IMP	ZFIN:ZDB-MRPHLNO-140305-1	Zfish	PMID:24166846
Biological Process	GO:0001822	kidney development	pde6d	IMP	ZFIN:ZDB-MRPHLNO-140305-1	Zfish	PMID:24166846

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern