Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PCDH19
  • Mouse genes Pcdh19
  • Rat genes Pcdh19
  • Zfish genes pcdh19
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pcdh19

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005509	calcium ion binding	pcdh19	IDA		Zfish	PMID:27787195
Molecular Function	GO:0042802	identical protein binding	pcdh19	IPI	ZFIN:ZDB-GENE-030131-4218	Zfish	PMID:27787195
Cellular Component	GO:0016020	membrane	pcdh19	IDA		Zfish	PMID:27787195
Biological Process	GO:0048854	brain morphogenesis	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-2	Zfish	PMID:19615992
Biological Process	GO:0048854	brain morphogenesis	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-1	Zfish	PMID:19615992
Biological Process	GO:0048854	brain morphogenesis	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-3	Zfish	PMID:19615992
Biological Process	GO:0001841	neural tube formation	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-1	Zfish	PMID:19615992
Biological Process	GO:0001841	neural tube formation	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-2	Zfish	PMID:19615992
Biological Process	GO:0001841	neural tube formation	pcdh19	IMP	ZFIN:ZDB-MRPHLNO-100406-3	Zfish	PMID:19615992
Biological Process	GO:0007601	visual perception	pcdh19	IMP	ZFIN:ZDB-GENO-160310-6	Zfish	PMID:26598617
Biological Process	GO:0007601	visual perception	pcdh19	IMP	ZFIN:ZDB-GENO-160310-5	Zfish	PMID:26598617
Biological Process	GO:0007601	visual perception	pcdh19	IMP	ZFIN:ZDB-GENO-160310-7	Zfish	PMID:26598617

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern