Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes PABPN1L
  • Mouse genes Pabpn1l
  • Rat genes Pabpn1l
  • Zfish genes pabpn1l
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Pabpn1l

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0008143	poly(A) binding	Pabpn1l	IDA		Mouse	PMID:32558204
Molecular Function	GO:0005515	protein binding	Pabpn1l	IPI	PR:O70552	Mouse	PMID:32558204
Molecular Function	GO:0003723	RNA binding	Pabpn1l	IDA		Mouse	PMID:32558204
Molecular Function	GO:0003723	RNA binding	Pabpn1l	IMP	MGI:MGI:6509577	Mouse	PMID:32558204
Cellular Component	GO:0005737	cytoplasm	Pabpn1l	IDA		Mouse	PMID:32558204
Biological Process	GO:0160021	maternal-to-zygotic transition of gene expression	Pabpn1l	IMP	MGI:MGI:6509577	Mouse	PMID:32558204
Biological Process	GO:0032091	negative regulation of protein binding	Pabpn1l	IDA		Mouse	PMID:32558204
Biological Process	GO:0031397	negative regulation of protein ubiquitination	Pabpn1l	IDA		Mouse	PMID:32558204
Biological Process	GO:0062026	negative regulation of SCF-dependent proteasomal ubiquitin-dependent catabolic process	Pabpn1l	IDA		Mouse	PMID:32558204
Biological Process	GO:0000288	nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay	Pabpn1l	IMP	MGI:MGI:6509577	Mouse	PMID:32558204

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern