Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes OPN3
  • Mouse genes Opn3
  • Rat genes Opn3
  • Zfish genes opn3
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Opn3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005502	11-cis retinal binding	OPN3	IDA		Human	PMID:31097585
Molecular Function	GO:0005503	all-trans retinal binding	OPN3	IDA		Human	PMID:31097585
Molecular Function	GO:0005515	protein binding	OPN3	IPI	UniProtKB:Q01726	Human	PMID:31097585
Molecular Function	GO:0016918	retinal binding	opn3	IDA		Zfish	PMID:27532629
Cellular Component	GO:0005737	cytoplasm	OPN3	IDA		Human	PMID:30168605
Cellular Component	GO:0005886	plasma membrane	OPN3	IDA		Human	PMID:30168605
Cellular Component	GO:0005886	plasma membrane	OPN3	IDA		Human	PMID:31097585
Cellular Component	GO:0005886	plasma membrane	OPN3	IDA		Human	PMID:31380578
Cellular Component	GO:0005886	plasma membrane	OPN3	IDA		Human	PMID:31730232
Biological Process	GO:0071492	cellular response to UV-A	OPN3	IDA		Human	PMID:31380578
Biological Process	GO:0030216	keratinocyte differentiation	OPN3	IMP		Human	PMID:30168605
Biological Process	GO:0043066	negative regulation of apoptotic process	OPN3	IMP		Human	PMID:31730232
Biological Process	GO:0048022	negative regulation of melanin biosynthetic process	OPN3	IMP		Human	PMID:31097585
Biological Process	GO:1901857	positive regulation of cellular respiration	Opn3	IMP		Mouse	MGI:MGI:6392469|PMID:32040503
Biological Process	GO:0046326	positive regulation of glucose import	Opn3	IMP		Mouse	MGI:MGI:6392469|PMID:32040503
Biological Process	GO:0048023	positive regulation of melanin biosynthetic process	OPN3	IMP		Human	PMID:28842328
Biological Process	GO:0009637	response to blue light	OPN3	IMP		Human	PMID:28842328
Biological Process	GO:0009637	response to blue light	OPN3	IDA		Human	PMID:30168605
Biological Process	GO:0009637	response to blue light	Opn3	IMP		Mouse	MGI:MGI:6392469|PMID:32040503

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern