Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NXF3
  • Mouse genes Nxf3
  • Rat genes Nxf3
  • Zfish genes nxf1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nxf3

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Nxf3	IDA		Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:O14980	Human	PMID:11545741
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:P35658	Human	PMID:11545741
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:P52594	Human	PMID:11545741
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9NPJ8	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9UKK6	Human	PMID:16189514
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9UKK6	Human	PMID:19060904
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9NPJ8	Human	PMID:21516116
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:P12757	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9NPJ8	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9UKK6	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9NPJ8	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9UKK6	Human	PMID:31515488
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9NPJ8-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NXF3	IPI	UniProtKB:Q9UKK6	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Nxf3	IPI	PR:Q9QZV9	Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	Nxf3	IPI	PR:Q3UNA4	Mouse	PMID:15820316
Cellular Component	GO:0005737	cytoplasm	NXF3	IDA		Human	PMID:11545741
Cellular Component	GO:0005737	cytoplasm	Nxf3	IDA		Mouse	PMID:15820316
Cellular Component	GO:0042272	nuclear RNA export factor complex	NXF3	IPI		Human	PMID:25416956
Cellular Component	GO:0042272	nuclear RNA export factor complex	NXF3	IDA		Human	PMID:11545741
Cellular Component	GO:0005654	nucleoplasm	NXF3	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	NXF3	IDA		Human	PMID:11545741
Biological Process	GO:0006406	mRNA export from nucleus	NXF3	IDA		Human	PMID:11545741
Biological Process	GO:0051028	mRNA transport	nxf1b	IDA		Zfish	PMID:25605961
Biological Process	GO:0051028	mRNA transport	nxf1b	IGI	ZFIN:ZDB-GENE-050521-1	Zfish	PMID:25605961
Biological Process	GO:0016973	poly(A)+ mRNA export from nucleus	Nxf3	IPI	UniProtKB:Q77YF8	Mouse	PMID:15820316

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern