Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NXF2,NXF2B,NXF5
  • Mouse genes Nxf2
  • Rat genes Nxf2
  • Zfish genes nxf1b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nxf2

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0003729	mRNA binding	Nxf2	IDA		Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	NXF2	IPI	UniProtKB:Q9NPJ8-3	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NXF2	IPI	UniProtKB:P07686	Human	PMID:32814053
Molecular Function	GO:0005515	protein binding	NXF5	IPI	UniProtKB:Q9UKK6	Human	PMID:11566096
Molecular Function	GO:0005515	protein binding	Nxf2	IPI	UniProtKB:O15504	Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	Nxf2	IPI	PR:Q9QZV9	Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	Nxf2	IPI	UniProtKB:P37198	Mouse	PMID:15820316
Molecular Function	GO:0005515	protein binding	Nxf2	IPI	MGI:MGI:2147914	Mouse	PMID:15820316
Molecular Function	GO:0003723	RNA binding	NXF5	IDA		Human	PMID:11566096
Cellular Component	GO:0005737	cytoplasm	NXF5	IDA		Human	PMID:11566096
Cellular Component	GO:0005635	nuclear envelope	Nxf2	IDA		Mouse	PMID:16027110
Cellular Component	GO:0042272	nuclear RNA export factor complex	NXF2	IPI		Human	PMID:32296183
Cellular Component	GO:0005634	nucleus	NXF5	IDA		Human	PMID:11566096
Cellular Component	GO:0005634	nucleus	Nxf2	IDA		Mouse	PMID:16027110
Cellular Component	GO:0005634	nucleus	Nxf2	IDA		Mouse	PMID:15820316
Biological Process	GO:0006406	mRNA export from nucleus	NXF5	IDA		Human	PMID:11566096
Biological Process	GO:0051028	mRNA transport	nxf1b	IDA		Zfish	PMID:25605961
Biological Process	GO:0051028	mRNA transport	nxf1b	IGI	ZFIN:ZDB-GENE-050521-1	Zfish	PMID:25605961
Biological Process	GO:0016973	poly(A)+ mRNA export from nucleus	Nxf2	IPI	UniProtKB:Q6P250	Mouse	PMID:15820316
Biological Process	GO:0016973	poly(A)+ mRNA export from nucleus	Nxf2	IPI	PR:Q9QZV9	Mouse	PMID:15820316
Biological Process	GO:0006405	RNA export from nucleus	Nxf2	IDA		Mouse	PMID:16027110
Biological Process	GO:0050658	RNA transport	NXF5	IDA		Human	PMID:11566096

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern