Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NUB1
  • Mouse genes Nub1
  • Rat genes Nub1
  • Zfish genes nub1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nub1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:Q9NZN9	Human	PMID:12374762
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:O15205	Human	PMID:14757770
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:O15205	Human	PMID:16707496
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:Q15427	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:O15205	Human	PMID:25422469
Molecular Function	GO:0005515	protein binding	NUB1	IPI	UniProtKB:P54274	Human	PMID:27214791
Cellular Component	GO:0005829	cytosol	NUB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0097413	Lewy body	Nub1	IDA		Mouse	PMID:26797281
Cellular Component	GO:0005730	nucleolus	NUB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	NUB1	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	Nub1	IDA		Mouse	PMID:26797281
Biological Process	GO:0032436	positive regulation of proteasomal ubiquitin-dependent protein catabolic process	NUB1	IMP		Human	PMID:16707496
Biological Process	GO:0010498	proteasomal protein catabolic process	Nub1	IDA		Mouse	PMID:26797281
Biological Process	GO:0016567	protein ubiquitination	NUB1	IMP		Human	PMID:16707496
Biological Process	GO:0034612	response to tumor necrosis factor	NUB1	IEP		Human	PMID:16707496
Biological Process	GO:0034341	response to type II interferon	NUB1	IEP		Human	PMID:16707496
Biological Process	GO:0006511	ubiquitin-dependent protein catabolic process	NUB1	IMP		Human	PMID:16707496

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern