Comparative GO Graph (mouse, human, rat)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes NKRF
  • Mouse genes Nkrf
  • Rat genes Nkrf
  • Zfish genes nkrf
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Nkrf

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0001671	ATPase activator activity	NKRF	IDA		Human	PMID:32179686
Molecular Function	GO:0001228	DNA-binding transcription activator activity, RNA polymerase II-specific	NKRF	IDA		Human	PMID:10562553
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:O75569	Human	PMID:21900206
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:Q96C10	Human	PMID:21903422
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:O43143	Human	PMID:29021621
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:O43143	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:O75569	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:O95793	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:P78563-4	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:Q9UL40	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	NKRF	IPI	UniProtKB:P0DTD1:PRO_0000449628	Human	PMID:32838362
Molecular Function	GO:0003723	RNA binding	NKRF	HDA		Human	PMID:22658674
Molecular Function	GO:0003723	RNA binding	NKRF	HDA		Human	PMID:22681889
Molecular Function	GO:0000978	RNA polymerase II cis-regulatory region sequence-specific DNA binding	NKRF	IDA		Human	PMID:10562553
Cellular Component	GO:0005730	nucleolus	NKRF	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005654	nucleoplasm	NKRF	IDA		Human	GO_REF:0000052
Cellular Component	GO:0005634	nucleus	NKRF	IDA		Human	PMID:10562553
Biological Process	GO:0045892	negative regulation of DNA-templated transcription	NKRF	IDA		Human	PMID:10562553
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	NKRF	IDA		Human	PMID:10562553

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern