Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes MMP28
  • Mouse genes Mmp28
  • Rat genes Mmp28
  • Zfish genes mmp28
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Mmp28

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	MMP28	IPI	UniProtKB:P09958	Human	PMID:21152186
Cellular Component	GO:0062023	collagen-containing extracellular matrix	MMP28	HDA		Human	PMID:27068509
Cellular Component	GO:0005737	cytoplasm	Mmp28	IDA		Mouse	PMID:19265166
Biological Process	GO:0021782	glial cell development	mmp28	IMP	ZFIN:ZDB-CRISPR-191009-27,ZFIN:ZDB-CRISPR-191009-28	Zfish	PMID:30924555
Biological Process	GO:0010760	negative regulation of macrophage chemotaxis	Mmp28	IMP	MGI:MGI:3836773	Mouse	PMID:19265166
Biological Process	GO:0060041	retina development in camera-type eye	mmp28	IMP	ZFIN:ZDB-CRISPR-191009-27,ZFIN:ZDB-CRISPR-191009-28	Zfish	PMID:30924555

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern