Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes MATN1
  • Mouse genes Matn1
  • Rat genes Matn1
  • Zfish genes matn1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Matn1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	MATN1	IPI	UniProtKB:P49747	Human	PMID:15075323
Molecular Function	GO:0005515	protein binding	MATN1	IPI	UniProtKB:P02459	Human	PMID:20729554
Molecular Function	GO:0005515	protein binding	Matn1	IPI	PR:Q9D882	Mouse	PMID:11591653
Cellular Component	GO:0031012	extracellular matrix	Matn1	IDA		Mouse	PMID:11102754
Biological Process	GO:0051216	cartilage development	matn1	IMP	ZFIN:ZDB-MRPHLNO-140218-1	Zfish	PMID:24293366
Biological Process	GO:0002062	chondrocyte differentiation	Matn1	IMP	MGI:MGI:3663272	Mouse	PMID:16877353
Biological Process	GO:0002062	chondrocyte differentiation	Matn1	IMP	MGI:MGI:2153042	Mouse	PMID:16877353
Biological Process	GO:0003429	growth plate cartilage chondrocyte morphogenesis	Matn1	IMP	MGI:MGI:3663272	Mouse	PMID:16877353
Biological Process	GO:0003429	growth plate cartilage chondrocyte morphogenesis	Matn1	IMP	MGI:MGI:2153042	Mouse	PMID:16877353
Biological Process	GO:0030500	regulation of bone mineralization	Matn1	IMP	MGI:MGI:3663272	Mouse	PMID:16877353
Biological Process	GO:0030500	regulation of bone mineralization	Matn1	IMP	MGI:MGI:2153042	Mouse	PMID:16877353

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern