Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LMCD1
  • Mouse genes Lmcd1
  • Rat genes Lmcd1
  • Zfish genes lmcd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lmcd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LMCD1	IPI	UniProtKB:P47224	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LMCD1	IPI	UniProtKB:Q8WW24	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	Lmcd1	IPI	PR:Q61169	Mouse	PMID:16199866
Molecular Function	GO:0003714	transcription corepressor activity	Lmcd1	IDA		Mouse	PMID:16199866
Cellular Component	GO:0005634	nucleus	Lmcd1	IDA		Mouse	PMID:16199866
Biological Process	GO:0000122	negative regulation of transcription by RNA polymerase II	Lmcd1	IGI	MGI:MGI:107516	Mouse	PMID:16199866
Biological Process	GO:0070886	positive regulation of calcineurin-NFAT signaling cascade	LMCD1	IMP		Human	PMID:20026769
Biological Process	GO:0070886	positive regulation of calcineurin-NFAT signaling cascade	Lmcd1	IMP		Mouse	MGI:MGI:4442539|PMID:20026769
Biological Process	GO:0010611	regulation of cardiac muscle hypertrophy	LMCD1	IMP		Human	PMID:20026769
Biological Process	GO:0010611	regulation of cardiac muscle hypertrophy	Lmcd1	IMP		Mouse	MGI:MGI:4442539|PMID:20026769

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern