Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LCA5
  • Mouse genes Lca5
  • Rat genes Lca5
  • Zfish genes lca5
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Lca5

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:O75665	Human	PMID:19800048
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q3B820	Human	PMID:22940612
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:P40222	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q9P2K3	Human	PMID:25416956
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q9UBB9	Human	PMID:26638075
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:O43805	Human	PMID:27173435
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:O43805	Human	PMID:28514442
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q96CN9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q9P2K3-2	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q9UBB9	Human	PMID:32296183
Molecular Function	GO:0005515	protein binding	LCA5	IPI	UniProtKB:Q9UMX1	Human	PMID:32296183
Molecular Function	GO:0044877	protein-containing complex binding	LCA5	IDA		Human	PMID:21606596
Cellular Component	GO:0005930	axoneme	Lca5	IDA		Mouse	PMID:24833722
Cellular Component	GO:0036064	ciliary basal body	Lca5	IDA		Mouse	PMID:24833722
Cellular Component	GO:0036064	ciliary basal body	Lca5	IDA		Rat	PMID:17546029|RGD:14397561
Cellular Component	GO:0005929	cilium	LCA5	IDA		Human	PMID:21606596
Cellular Component	GO:0005929	cilium	Lca5	IMP		Mouse	MGI:MGI:5050784|PMID:21606596
Cellular Component	GO:0005929	cilium	Lca5	IDA		Mouse	PMID:21606596
Cellular Component	GO:0043005	neuron projection	Lca5	IDA		Mouse	PMID:21606596
Cellular Component	GO:0032391	photoreceptor connecting cilium	LCA5	IDA		Human	PMID:21606596
Cellular Component	GO:0032391	photoreceptor connecting cilium	Lca5	IDA		Mouse	MGI:MGI:5050784|PMID:21606596
Cellular Component	GO:0032391	photoreceptor connecting cilium	Lca5	IDA		Rat	PMID:17546029|RGD:14397561
Biological Process	GO:0042073	intraciliary transport	Lca5	IMP		Mouse	PMID:21606596
Biological Process	GO:0045494	photoreceptor cell maintenance	Lca5	IMP		Mouse	PMID:21606596
Biological Process	GO:0045494	photoreceptor cell maintenance	lca5	IMP	ZFIN:ZDB-GENO-210202-4	Zfish	PMID:31348989
Biological Process	GO:0035845	photoreceptor cell outer segment organization	lca5	IMP	ZFIN:ZDB-GENO-210202-4	Zfish	PMID:31348989

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern