Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes LARP6
  • Mouse genes Larp6
  • Rat genes Larp6
  • Zfish genes larp6a
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Larp6

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0048027	mRNA 5'-UTR binding	LARP6	IDA		Human	PMID:20603131
Molecular Function	GO:0048027	mRNA 5'-UTR binding	LARP6	IMP		Human	PMID:21746880
Molecular Function	GO:0048027	mRNA 5'-UTR binding	LARP6	IDA		Human	PMID:22190748
Molecular Function	GO:0017022	myosin binding	LARP6	IPI	UniProtKB:P35579	Human	PMID:20603131
Molecular Function	GO:0017022	myosin binding	LARP6	IPI	UniProtKB:P35580	Human	PMID:20603131
Molecular Function	GO:0005515	protein binding	LARP6	IPI	UniProtKB:P08670	Human	PMID:20603131
Molecular Function	GO:0005515	protein binding	LARP6	IPI	UniProtKB:P08670	Human	PMID:21746880
Molecular Function	GO:0005515	protein binding	LARP6	IPI	UniProtKB:Q08211	Human	PMID:22190748
Molecular Function	GO:0005515	protein binding	Larp6	IPI	PR:P41136	Mouse	PMID:19096764
Molecular Function	GO:0005515	protein binding	Larp6	IPI	PR:O70589-3	Mouse	PMID:19096764
Molecular Function	GO:0005515	protein binding	Larp6	IPI	PR:P41133	Mouse	PMID:19096764
Molecular Function	GO:0005515	protein binding	Larp6	IPI	PR:P20067	Mouse	PMID:19096764
Molecular Function	GO:0005515	protein binding	Larp6	IPI	PR:P41139	Mouse	PMID:19096764
Molecular Function	GO:0003723	RNA binding	larp6a	IDA		Zfish	PMID:28400296
Molecular Function	GO:0035613	RNA stem-loop binding	LARP6	IDA		Human	PMID:20603131
Molecular Function	GO:0035613	RNA stem-loop binding	LARP6	IMP		Human	PMID:21746880
Molecular Function	GO:1990825	sequence-specific mRNA binding	LARP6	IDA		Human	PMID:22190748
Cellular Component	GO:0005634	nucleus	LARP6	IDA		Human	PMID:21746880
Cellular Component	GO:0005844	polysome	LARP6	IDA		Human	PMID:20603131
Cellular Component	GO:0005844	polysome	LARP6	IMP		Human	PMID:21746880
Cellular Component	GO:0005844	polysome	LARP6	IDA		Human	PMID:22190748
Cellular Component	GO:1990904	ribonucleoprotein complex	LARP6	IMP		Human	PMID:21746880
Cellular Component	GO:1990904	ribonucleoprotein complex	LARP6	IDA		Human	PMID:22190748
Biological Process	GO:0032967	positive regulation of collagen biosynthetic process	LARP6	IMP		Human	PMID:21746880
Biological Process	GO:1902416	positive regulation of mRNA binding	LARP6	IMP		Human	PMID:21746880
Biological Process	GO:1902416	positive regulation of mRNA binding	LARP6	IDA		Human	PMID:22190748
Biological Process	GO:0045727	positive regulation of translation	LARP6	IMP		Human	PMID:21746880
Biological Process	GO:0001756	somitogenesis	larp6a	IMP	ZFIN:ZDB-MRPHLNO-090831-2,ZFIN:ZDB-MRPHLNO-090831-3	Zfish	PMID:19481601

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern