Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes KDM4B
  • Mouse genes Kdm4b
  • Rat genes Kdm4b
  • Zfish genes kdm4b
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Kdm4b

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0032452	histone demethylase activity	Kdm4b	IDA		Mouse	PMID:19144645
Molecular Function	GO:0051864	histone H3K36 demethylase activity	KDM4B	IDA		Human	PMID:21914792
Molecular Function	GO:0051864	histone H3K36 demethylase activity	Kdm4b	IMP		Mouse	PMID:16738407
Molecular Function	GO:0051864	histone H3K36 demethylase activity	Kdm4b	IDA		Mouse	PMID:16738407
Molecular Function	GO:0032454	histone H3K9 demethylase activity	KDM4B	IMP		Human	PMID:28262558
Molecular Function	GO:0032454	histone H3K9 demethylase activity	Kdm4b	IMP		Mouse	PMID:16738407
Molecular Function	GO:0032454	histone H3K9 demethylase activity	Kdm4b	IDA		Mouse	PMID:16738407
Molecular Function	GO:0140684	histone H3K9me2/H3K9me3 demethylase activity	KDM4B	IDA		Human	PMID:21914792
Cellular Component	GO:0005634	nucleus	Kdm4b	IDA		Rat	PMID:15927959|RGD:9587432
Cellular Component	GO:0005721	pericentric heterochromatin	Kdm4b	IDA		Mouse	PMID:16738407
Biological Process	GO:0007420	brain development	Kdm4b	IMP		Mouse	MGI:MGI:6101669|PMID:27023172

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern