Comparative GO Graph (mouse, human, rat, zebrafish)

• Source: Alliance of Genome Resources

Graphs for Molecular Function, Cellular Component, Biological Process generated Fri Mar 10 16:36:22 2023.

Complete table of the annotations represented in this image is provided below.

Graphs display curated GO classifications for mouse, human, rat and zebrafish orthologs annotated from the biomedical literature.

• This class contains
  • Human genes IFRD1
  • Mouse genes Ifrd1
  • Rat genes Ifrd1
  • Zfish genes ifrd1
• Annotations are indicated with nodes colored by organism: Human, Mouse, Rat, Zfish
• Relations between GO terms are indicated by colored edges "is_a"; "part_of"; "regulates"; "positively_regulates"; "negatively_regulates"
• GO annotations: Human from GOA; Mouse from MGI; Rat from RGD; Zebrafish from ZFIN.
• Only experimental annotations are displayed: EXP, IDA, IEP, IGI, IMP, IPI, HTP, HDA, HMP, HGI, HEP. Evidence codes are listed at the bottom of the page.

Molecular Function

Cellular Component

Biological Process

Full set of experimental annotations for Human-Rat-Zebrafish genes considered orthologs of Mouse in the Alliance stringent orthology set Ifrd1

Category	ID	Classification term	Gene	Evidence	Inferred from	Organism	Reference
Molecular Function	GO:0061629	RNA polymerase II-specific DNA-binding transcription factor binding	Ifrd1	IPI	UniProtKB:Q8CFN5	Rat	PMID:15743821|RGD:10047350
Cellular Component	GO:0005737	cytoplasm	Ifrd1	IDA		Mouse	PMID:15743821
Cellular Component	GO:0005634	nucleus	Ifrd1	IDA		Mouse	PMID:15743821
Cellular Component	GO:0005634	nucleus	Ifrd1	IDA		Mouse	PMID:15060170
Cellular Component	GO:0016528	sarcoplasm	Ifrd1	IDA		Mouse	PMID:15743821
Biological Process	GO:0014009	glial cell proliferation	Ifrd1	IEP		Rat	PMID:8919308|RGD:729202
Biological Process	GO:0042692	muscle cell differentiation	Ifrd1	IMP	MGI:MGI:3043556	Mouse	PMID:15060170
Biological Process	GO:0030517	negative regulation of axon extension	Ifrd1	IGI	MGI:MGI:97321	Mouse	PMID:18052984
Biological Process	GO:0048671	negative regulation of collateral sprouting	Ifrd1	IGI	MGI:MGI:97321	Mouse	PMID:18052984
Biological Process	GO:0007405	neuroblast proliferation	Ifrd1	IEP		Rat	PMID:8919308|RGD:729202
Biological Process	GO:0051091	positive regulation of DNA-binding transcription factor activity	Ifrd1	IGI	UniProtKB:Q8CFN5	Rat	PMID:15743821|RGD:10047350
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ifrd1	IGI	UniProtKB:P10085	Rat	PMID:15743821|RGD:10047350
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ifrd1	IGI	UniProtKB:P56524	Rat	PMID:15743821|RGD:10047350
Biological Process	GO:0045944	positive regulation of transcription by RNA polymerase II	Ifrd1	IGI	UniProtKB:Q8CFN5	Rat	PMID:15743821|RGD:10047350
Biological Process	GO:0043403	skeletal muscle tissue regeneration	Ifrd1	IMP	MGI:MGI:3043556	Mouse	PMID:15060170
Biological Process	GO:0014706	striated muscle tissue development	Ifrd1	IMP	MGI:MGI:3043556	Mouse	PMID:15060170

Gene Ontology Evidence Code Abbreviations:

  EXP Inferred from experiment

  IDA Inferred from direct assay

  IEP Inferred from expression pattern

  IGI Inferred from genetic interaction

  IMP Inferred from mutant phenotype

  IPI Inferred from physical interaction

  HTP Inferred from High Throughput Experiment

  HDA Inferred from High Throughput Direct Assay

  HMP Inferred from High Throughput Mutant Phenotype

  HGI Inferred from High Throughput Genetic Interaction

  HEP Inferred from High Throughput Expression Pattern